else
href=mylink.href;
var param = 'width='+width+',height=600,scrollbars=yes';
window.open(href, windowname, param);
return false;
}
//-->
</script>
<?php
echo $meta;
?>
</head>
<body>
<?php
if ($errors = input_errors()) {
echo $errors;
} else {
$rows_per_page = 100;
$url = htmlentities($_SERVER['REQUEST_URI']);
$sqlresult = build_runselect_sql($_GET);
$sql = $sqlresult['sql'];
$binds = $sqlresult['binds'];
$total_rows = count_rows($conn, $sql, $binds);
$sum_events = fetch_sum_events($sqlresult);
if ($total_rows == 0) {
echo "<h3>No results found.</h3>";
} else {
$total_pages = total_pages($total_rows, $rows_per_page);
// Set the page number
if (isset($_GET['page'])) {
$validRepMask = $RepeatMask_Status == "Yes" ? validate_library($RepeatMask_File, "Repeat Mask Library", $dbpass) : "";
//from conf_functions.inc.php
$file_codes = $arrayList[4];
#single-letter code string
$input_errors = input_errors($file_codes);
$input_warnings = input_warnings($Input_Data_Path);
######## Display Input Results ###########
$input_results_array = input_results($file_codes, $CpGAT_Status, $RepeatMask_Status, $GSQ_CompResources, $GTH_CompResources);
// list of expected results based on one-letter code of input files (see conf_functions.inc.php)
$input_results = $input_results_array[0];
$tracks = $input_results_array[1];
$remote_flag = $input_results_array[2];
$input_results_display = $input_results == "" ? "" : "<div class=\"showhide\">\n\t\t\t\t\t\t\t<p class=\" label bold\" style=\"cursor:pointer\" title=\"Show input results\">\n\t\t\t\t\t\t\t\t<span class=\"normalfont\" style=\"font-weight:normal\">\n\t\t\t\t\t\t\t\t\tExpected Ouput: \n\t\t\t\t\t\t\t\t</span>\n\t\t\t\t\t\t\t\t<span class=\"normalfont\" style=\"color: orange\"> \n\t\t\t\t\t\t\t\t {$tracks} tracks based on input files: \n\t\t\t\t\t\t\t\t <span class=\"heading normalfont\">\n\t\t\t\t\t\t\t\t (click for details)\n\t\t\t\t\t\t\t\t </span>\n\t\t\t\t\t\t\t\t</span>\n\t\t\t\t\t\t\t</p>\n\t\t\t\t\t\t\t<div class=\" hidden results\" style=\"display: none;\">\n\t\t\t\t\t\t\t\t<ul class=\"menulist bottommargin1\" id=\"input_results_1\">\n\t\t\t\t\t\t\t\t{$input_results}\n\t\t\t\t\t\t\t\t</ul>\n\t\t\t\t\t\t\t\t<span class=\"heading\">Not what you expected? Check that all filenames are correct according to <a href=\"/XGDB/conf/data.php#filename_requirements\">Filename Requirements</a></span>\n\t\t\t\t\t\t\t</div>\n\t\t\t\t\t\t</div>\n\t\t\t\t\t\t";
######## Display Input Errors and warnings ###########
# $input_warnings="<li> this is a test</li>";
$input_errors = input_errors($file_codes);
// list of any input file errors based on one-letter code of input files (see conf_functions.inc.php)
$input_errors_display = $input_errors == "" && $input_warnings == "" || !empty($Restore_From_File) ? "" : "<div class=\"showhide\">\n\t\t\t\t\t\t\t<p class=\" label bold\" style=\"cursor:pointer\" title=\"Show input errors\">\n\t\t\t\t\t\t\t\t\t<span class=\"normalfont\" style=\"color: red\">Input File Errors Exist: <span class=\"heading normalfont\">(click for details)</span></p>\n\t\t\t\t\t\t\t<div class=\" hidden error\" style=\"display: none;\">\n\t\t\t\t\t\t\t\t<ul class=\"menulist bottommargin1\" id=\"input_errors\">\n\t\t\t\t\t\t\t\t{$input_warnings}\n\t\t\t\t\t\t\t\t{$input_errors}\n\t\t\t\t\t\t\t\t</ul>\n\t\t\t\t\t\t\t\t<span class=\"heading\">See <a href=\"/XGDB/conf/data.php#filename_requirements\">Filename Requirements</a> for more information</span>\n\t\t\t\t\t\t\t</div>\n\t\t\t\t\t\t</div>\n\t\t\t\t\t\t";
############# retrieve disk space data for display ###########
$validGB_display = $validGB * 10;
// safety factor threshold
$path1 = "/xGDBvm/";
$df_array1 = df_available($path1);
$filesys1 = $df_array1[0];
$available1 = $df_array1[1];
$gb1 = round($available1 / 1000000, 1);
$gb1_display = $gb1 <= 0.1 ? "<span class=\"warning\">{$gb1}</span>" : "<span class=\"checked\">{$gb1}</span>";
$gb1_details = $gb1 <= 0.1 ? "<span class=\"warning\">{$gb1} GB</span> may not be sufficient!" : "<span class=\"checked\">{$gb1} GB</span> is sufficient";
$path2 = "/xGDBvm/data/";
$df_array2 = df_available($path2);
$filesys2 = $df_array2[0];