{

//----------------------------------------------------------------------------------------------

function __construct()

{

$this->name = 'BioStor';

$this->identifierSpace = 'http://biostor.org/';

$this->schemaSpace = 'http://rdf.freebase.com/ns/type.object.id';

$this->Types();

$view_url = 'http://biostor.org/reference/{{id}}';

$preview_url = '';

$width = 430;

$height = 300;

if ($view_url != '')

{

$this->View($view_url);

}

if ($preview_url != '')

{

$this->Preview($preview_url, $width, $height);

}

}

//----------------------------------------------------------------------------------------------

function Types()

{

$type = new stdclass;

$type->id = 'https://schema.org/CreativeWork';

$type->name = 'CreativeWork';

$this->defaultTypes[] = $type;

}

/*

// Cloudant

//----------------------------------------------------------------------------------------------

// Handle an individual query

function OneQuery($query_key, $text, $limit = 1, $properties = null)

{

global $config;

// clean text

$text = str_replace(':', '', $text);

$text = str_replace('"', '', $text);

// BioStor search API

$url = 'http://biostor.org/api.php?q=' . urlencode($text);

//file_put_contents('/tmp/q.txt', $url, FILE_APPEND);

$json = get($url);

//file_put_contents('/tmp/q.txt', $json, FILE_APPEND);

if ($json != '')

{

$obj = json_decode($json);

if (isset($obj->rows))

{

//foreach ($obj->rows as $row)

//$row = $obj->rows[0];

for ($i = 0; $i < 3; $i++)

{

$row = $obj->rows[$i];

// check

$v1 = finger_print($text);

$v2 = finger_print($row->fields->default);

$lcs = new LongestCommonSequence($v1, $v2);

$d = $lcs->score();

// echo $d;

$score = min($d / strlen($v1), $d / strlen($v2));

if ($score > 0.80)

{

$hit = new stdclass;

$hit->id = str_replace('biostor/', '', $row->id);

$hit->name = $row->doc->title;

$hit->score = $score;

$hit->match = true;

$this->StoreHit($query_key, $hit);

}

}

}

}

}

*/

// Elastic

//----------------------------------------------------------------------------------------------

// Handle an individual query

function OneQuery($query_key, $text, $limit = 1, $properties = null)

{

global $config;

// clean text

$text = str_replace(':', '', $text);

$text = str_replace('"', '', $text);

// BioStor search API

$url = 'http://biostor.org/api.php?q=' . urlencode($text);

//file_put_contents('/tmp/q.txt', $url, FILE_APPEND);

$json = get($url);

//file_put_contents('/tmp/q.txt', $json, FILE_APPEND);

if ($json != '')

{

$obj = json_decode($json);

if (isset($obj->hits))

{

for ($i = 0; $i < 3; $i++)

{

$row = $obj->hits->hits[$i];

// check

$v1 = finger_print($text);

$hit_text = '';

if (isset($obj->hits->hits[$i]->_source->search_result_data->creator))

{

$hit_text .= join(' ', $obj->hits->hits[$i]->_source->search_result_data->creator);

$hit_text .= ' ';

}

$hit_text .= $obj->hits->hits[$i]->_source->search_result_data->name;

$hit_text .= $obj->hits->hits[$i]->_source->search_result_data->description;

$hit_text = preg_replace('/Published\s+in\s+/', '', $hit_text);

$hit_text = preg_replace('/,\s+in\s+/', ' ', $hit_text);

$hit_text = preg_replace('/\s+volume/', '', $hit_text);

$hit_text = preg_replace('/,\s+pages\s+/', ' ', $hit_text);

$v2 = finger_print($hit_text);

$lcs = new LongestCommonSequence($v1, $v2);

$d = $lcs->score();

// echo $d;

$score = min($d / strlen($v1), $d / strlen($v2));

if ($score > 0.80)

{

$hit = new stdclass;

$hit->id = str_replace('biostor-', '', $obj->hits->hits[$i]->_id);

$hit->name = $obj->hits->hits[$i]->_source->search_result_data->name;

$hit->score = $score;

$hit->match = true;

$this->StoreHit($query_key, $hit);

}

}

}

}

}