public function run()
{
/* Users table */
$usersData = array(array("username" => "administrator", "password" => Hash::make("password"), "email" => "*****@*****.**", "name" => "kBLIS Administrator", "designation" => "Programmer"), array("username" => "external", "password" => Hash::make("password"), "email" => "*****@*****.**", "name" => "External System User", "designation" => "Administrator", "image" => "/i/users/user-2.jpg"), array("username" => "lmorena", "password" => Hash::make("password"), "email" => "*****@*****.**", "name" => "L. Morena", "designation" => "Lab Technologist", "image" => "/i/users/user-3.png"), array("username" => "abumeyang", "password" => Hash::make("password"), "email" => "*****@*****.**", "name" => "A. Abumeyang", "designation" => "Doctor"));
foreach ($usersData as $user) {
$users[] = User::create($user);
}
$this->command->info('users seeded');
/* Specimen Types table */
$specTypesData = array(array("name" => "Ascitic Tap"), array("name" => "Aspirate"), array("name" => "CSF"), array("name" => "Dried Blood Spot"), array("name" => "High Vaginal Swab"), array("name" => "Nasal Swab"), array("name" => "Plasma"), array("name" => "Plasma EDTA"), array("name" => "Pleural Tap"), array("name" => "Pus Swab"), array("name" => "Rectal Swab"), array("name" => "S***n"), array("name" => "Serum"), array("name" => "Skin"), array("name" => "Sputum"), array("name" => "Stool"), array("name" => "Synovial Fluid"), array("name" => "Throat Swab"), array("name" => "Urethral Smear"), array("name" => "Urine"), array("name" => "Vaginal Smear"), array("name" => "Water"), array("name" => "Whole Blood"));
foreach ($specTypesData as $specimenType) {
$specTypes[] = SpecimenType::create($specimenType);
}
$this->command->info('specimen_types seeded');
/* Test Categories table - These map on to the lab sections */
$test_categories = TestCategory::create(array("name" => "PARASITOLOGY", "description" => ""));
$lab_section_microbiology = TestCategory::create(array("name" => "MICROBIOLOGY", "description" => ""));
$this->command->info('test_categories seeded');
/* Measure Types */
$measureTypes = array(array("id" => "1", "name" => "Numeric Range"), array("id" => "2", "name" => "Alphanumeric Values"), array("id" => "3", "name" => "Autocomplete"), array("id" => "4", "name" => "Free Text"));
foreach ($measureTypes as $measureType) {
MeasureType::create($measureType);
}
$this->command->info('measure_types seeded');
/* Measures table */
$measureBSforMPS = Measure::create(array("measure_type_id" => "2", "name" => "BS for mps", "unit" => ""));
$measure1 = Measure::create(array("measure_type_id" => "2", "name" => "Grams stain", "unit" => ""));
$measure2 = Measure::create(array("measure_type_id" => "2", "name" => "SERUM AMYLASE", "unit" => ""));
$measure3 = Measure::create(array("measure_type_id" => "2", "name" => "calcium", "unit" => ""));
$measure4 = Measure::create(array("measure_type_id" => "2", "name" => "SGOT", "unit" => ""));
$measure5 = Measure::create(array("measure_type_id" => "2", "name" => "Indirect COOMBS test", "unit" => ""));
$measure6 = Measure::create(array("measure_type_id" => "2", "name" => "Direct COOMBS test", "unit" => ""));
$measure7 = Measure::create(array("measure_type_id" => "2", "name" => "Du test", "unit" => ""));
MeasureRange::create(array("measure_id" => $measureBSforMPS->id, "alphanumeric" => "No mps seen", "interpretation" => "Negative"));
MeasureRange::create(array("measure_id" => $measureBSforMPS->id, "alphanumeric" => "+", "interpretation" => "Positive"));
MeasureRange::create(array("measure_id" => $measureBSforMPS->id, "alphanumeric" => "++", "interpretation" => "Positive"));
MeasureRange::create(array("measure_id" => $measureBSforMPS->id, "alphanumeric" => "+++", "interpretation" => "Positive"));
MeasureRange::create(array("measure_id" => $measure1->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure1->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure2->id, "alphanumeric" => "Low"));
MeasureRange::create(array("measure_id" => $measure2->id, "alphanumeric" => "High"));
MeasureRange::create(array("measure_id" => $measure2->id, "alphanumeric" => "Normal"));
MeasureRange::create(array("measure_id" => $measure3->id, "alphanumeric" => "High"));
MeasureRange::create(array("measure_id" => $measure3->id, "alphanumeric" => "Low"));
MeasureRange::create(array("measure_id" => $measure3->id, "alphanumeric" => "Normal"));
MeasureRange::create(array("measure_id" => $measure4->id, "alphanumeric" => "High"));
MeasureRange::create(array("measure_id" => $measure4->id, "alphanumeric" => "Low"));
MeasureRange::create(array("measure_id" => $measure4->id, "alphanumeric" => "Normal"));
MeasureRange::create(array("measure_id" => $measure5->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure5->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure6->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure6->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure7->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure7->id, "alphanumeric" => "Negative"));
$measures = array(array("measure_type_id" => "1", "name" => "URIC ACID", "unit" => "mg/dl"), array("measure_type_id" => "4", "name" => "CSF for biochemistry", "unit" => ""), array("measure_type_id" => "4", "name" => "PSA", "unit" => ""), array("measure_type_id" => "1", "name" => "Total", "unit" => "mg/dl"), array("measure_type_id" => "1", "name" => "Alkaline Phosphate", "unit" => "u/l"), array("measure_type_id" => "1", "name" => "Direct", "unit" => "mg/dl"), array("measure_type_id" => "1", "name" => "Total Proteins", "unit" => ""), array("measure_type_id" => "4", "name" => "LFTS", "unit" => "NULL"), array("measure_type_id" => "1", "name" => "Chloride", "unit" => "mmol/l"), array("measure_type_id" => "1", "name" => "Potassium", "unit" => "mmol/l"), array("measure_type_id" => "1", "name" => "Sodium", "unit" => "mmol/l"), array("measure_type_id" => "4", "name" => "Electrolytes", "unit" => ""), array("measure_type_id" => "1", "name" => "Creatinine", "unit" => "mg/dl"), array("measure_type_id" => "1", "name" => "Urea", "unit" => "mg/dl"), array("measure_type_id" => "4", "name" => "RFTS", "unit" => ""), array("measure_type_id" => "4", "name" => "TFT", "unit" => ""));
foreach ($measures as $measure) {
Measure::create($measure);
}
$measureGXM = Measure::create(array("measure_type_id" => "4", "name" => "GXM", "unit" => ""));
$measureBG = Measure::create(array("measure_type_id" => "2", "name" => "Blood Grouping", "unit" => ""));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "O-"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "O+"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "A-"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "A+"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "B-"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "B+"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "AB-"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "AB+"));
$measureHB = Measure::create(array("measure_type_id" => Measure::NUMERIC, "name" => "HB", "unit" => "g/dL"));
$measuresUrinalysisData = array(array("measure_type_id" => "4", "name" => "Urine microscopy", "unit" => ""), array("measure_type_id" => "4", "name" => "Pus cells", "unit" => ""), array("measure_type_id" => "4", "name" => "S. haematobium", "unit" => ""), array("measure_type_id" => "4", "name" => "T. vaginalis", "unit" => ""), array("measure_type_id" => "4", "name" => "Yeast cells", "unit" => ""), array("measure_type_id" => "4", "name" => "Red blood cells", "unit" => ""), array("measure_type_id" => "4", "name" => "Bacteria", "unit" => ""), array("measure_type_id" => "4", "name" => "Spermatozoa", "unit" => ""), array("measure_type_id" => "4", "name" => "Epithelial cells", "unit" => ""), array("measure_type_id" => "4", "name" => "ph", "unit" => ""), array("measure_type_id" => "4", "name" => "Urine chemistry", "unit" => ""), array("measure_type_id" => "4", "name" => "Glucose", "unit" => ""), array("measure_type_id" => "4", "name" => "Ketones", "unit" => ""), array("measure_type_id" => "4", "name" => "Proteins", "unit" => ""), array("measure_type_id" => "4", "name" => "Blood", "unit" => ""), array("measure_type_id" => "4", "name" => "Bilirubin", "unit" => ""), array("measure_type_id" => "4", "name" => "Urobilinogen Phenlpyruvic acid", "unit" => ""), array("measure_type_id" => "4", "name" => "pH", "unit" => ""));
foreach ($measuresUrinalysisData as $measureU) {
$measuresUrinalysis[] = Measure::create($measureU);
}
$measuresWBCData = array(array("measure_type_id" => Measure::NUMERIC, "name" => "WBC", "unit" => "x10³/µL"), array("measure_type_id" => Measure::NUMERIC, "name" => "Lym", "unit" => "L"), array("measure_type_id" => Measure::NUMERIC, "name" => "Mon", "unit" => "*"), array("measure_type_id" => Measure::NUMERIC, "name" => "Neu", "unit" => "*"), array("measure_type_id" => Measure::NUMERIC, "name" => "Eos", "unit" => ""), array("measure_type_id" => Measure::NUMERIC, "name" => "Baso", "unit" => ""));
foreach ($measuresWBCData as $value) {
$measuresWBC[] = Measure::create($value);
}
$measureRangesWBC = array(array("measure_id" => $measuresWBC[0]->id, "age_min" => 0, "age_max" => 100, "gender" => MeasureRange::BOTH, "range_lower" => 4, "range_upper" => 11), array("measure_id" => $measuresWBC[1]->id, "age_min" => 0, "age_max" => 100, "gender" => MeasureRange::BOTH, "range_lower" => 1.5, "range_upper" => 4), array("measure_id" => $measuresWBC[2]->id, "age_min" => 0, "age_max" => 100, "gender" => MeasureRange::BOTH, "range_lower" => 0.1, "range_upper" => 9), array("measure_id" => $measuresWBC[3]->id, "age_min" => 0, "age_max" => 100, "gender" => MeasureRange::BOTH, "range_lower" => 2.5, "range_upper" => 7), array("measure_id" => $measuresWBC[4]->id, "age_min" => 0, "age_max" => 100, "gender" => MeasureRange::BOTH, "range_lower" => 0, "range_upper" => 6), array("measure_id" => $measuresWBC[5]->id, "age_min" => 0, "age_max" => 100, "gender" => MeasureRange::BOTH, "range_lower" => 0, "range_upper" => 2));
foreach ($measureRangesWBC as $value) {
MeasureRange::create($value);
}
$this->command->info('measures seeded');
/* Test Types table */
$testTypeBS = TestType::create(array("name" => "BS for mps", "test_category_id" => $test_categories->id, "orderable_test" => 1));
$testTypeStoolCS = TestType::create(array("name" => "Stool for C/S", "test_category_id" => $lab_section_microbiology->id));
$testTypeGXM = TestType::create(array("name" => "GXM", "test_category_id" => $test_categories->id));
$testTypeHB = TestType::create(array("name" => "HB", "test_category_id" => $test_categories->id, "orderable_test" => 1));
$testTypeUrinalysis = TestType::create(array("name" => "Urinalysis", "test_category_id" => $test_categories->id));
$testTypeWBC = TestType::create(array("name" => "WBC", "test_category_id" => $test_categories->id));
$this->command->info('test_types seeded');
/* TestType Measure table */
TestTypeMeasure::create(array("test_type_id" => $testTypeBS->id, "measure_id" => $measureBSforMPS->id));
TestTypeMeasure::create(array("test_type_id" => $testTypeGXM->id, "measure_id" => $measureGXM->id));
TestTypeMeasure::create(array("test_type_id" => $testTypeGXM->id, "measure_id" => $measureBG->id));
TestTypeMeasure::create(array("test_type_id" => $testTypeHB->id, "measure_id" => $measureHB->id));
foreach ($measuresUrinalysis as $value) {
TestTypeMeasure::create(array("test_type_id" => $testTypeUrinalysis->id, "measure_id" => $value->id));
}
foreach ($measuresWBC as $value) {
TestTypeMeasure::create(array("test_type_id" => $testTypeWBC->id, "measure_id" => $value->id));
}
$this->command->info('testtype_measures seeded');
/* testtype_specimentypes table */
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeBS->id, "specimen_type_id" => $specTypes[count($specTypes) - 1]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeGXM->id, "specimen_type_id" => $specTypes[count($specTypes) - 1]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeHB->id, "specimen_type_id" => $specTypes[count($specTypes) - 1]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeHB->id, "specimen_type_id" => $specTypes[6]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeHB->id, "specimen_type_id" => $specTypes[7]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeHB->id, "specimen_type_id" => $specTypes[12]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeUrinalysis->id, "specimen_type_id" => $specTypes[19]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeUrinalysis->id, "specimen_type_id" => $specTypes[20]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeWBC->id, "specimen_type_id" => $specTypes[count($specTypes) - 1]->id));
$this->command->info('testtype_specimentypes seeded');
/* Patients table */
$patients_array = array(array("name" => "Jam Felicia", "email" => "*****@*****.**", "patient_number" => "1002", "dob" => "2000-01-01", "gender" => "1", "created_by" => "2"), array("name" => "Emma Wallace", "email" => "*****@*****.**", "patient_number" => "1003", "dob" => "1990-03-01", "gender" => "1", "created_by" => "2"), array("name" => "Jack Tee", "email" => "*****@*****.**", "patient_number" => "1004", "dob" => "1999-12-18", "gender" => "0", "created_by" => "1"), array("name" => "Hu Jintao", "email" => "*****@*****.**", "patient_number" => "1005", "dob" => "1956-10-28", "gender" => "0", "created_by" => "2"), array("name" => "Lance Opiyo", "email" => "*****@*****.**", "patient_number" => "2150", "dob" => "2012-01-01", "gender" => "0", "created_by" => "1"));
foreach ($patients_array as $pat) {
$patients[] = Patient::create($pat);
}
$this->command->info('patients seeded');
/* Test Phase table */
$test_phases = array(array("id" => "1", "name" => "Pre-Analytical"), array("id" => "2", "name" => "Analytical"), array("id" => "3", "name" => "Post-Analytical"));
foreach ($test_phases as $test_phase) {
TestPhase::create($test_phase);
}
$this->command->info('test_phases seeded');
/* Test Status table */
$test_statuses = array(array("id" => "1", "name" => "not-received", "test_phase_id" => "1"), array("id" => "2", "name" => "pending", "test_phase_id" => "1"), array("id" => "3", "name" => "started", "test_phase_id" => "2"), array("id" => "4", "name" => "completed", "test_phase_id" => "3"), array("id" => "5", "name" => "verified", "test_phase_id" => "3"));
foreach ($test_statuses as $test_status) {
TestStatus::create($test_status);
}
$this->command->info('test_statuses seeded');
/* Specimen Status table */
$specimen_statuses = array(array("id" => "1", "name" => "specimen-not-collected"), array("id" => "2", "name" => "specimen-accepted"), array("id" => "3", "name" => "specimen-rejected"));
foreach ($specimen_statuses as $specimen_status) {
SpecimenStatus::create($specimen_status);
}
$this->command->info('specimen_statuses seeded');
/* Visits table */
for ($i = 0; $i < 7; $i++) {
$visits[] = Visit::create(array("patient_id" => $patients[rand(0, count($patients) - 1)]->id));
}
$this->command->info('visits seeded');
/* Rejection Reasons table */
$rejection_reasons_array = array(array("reason" => "Poorly labelled"), array("reason" => "Over saturation"), array("reason" => "Insufficient Sample"), array("reason" => "Scattered"), array("reason" => "Clotted Blood"), array("reason" => "Two layered spots"), array("reason" => "Serum rings"), array("reason" => "Scratched"), array("reason" => "Haemolysis"), array("reason" => "Spots that cannot elute"), array("reason" => "Leaking"), array("reason" => "Broken Sample Container"), array("reason" => "Mismatched sample and form labelling"), array("reason" => "Missing Labels on container and tracking form"), array("reason" => "Empty Container"), array("reason" => "Samples without tracking forms"), array("reason" => "Poor transport"), array("reason" => "Lipaemic"), array("reason" => "Wrong container/Anticoagulant"), array("reason" => "Request form without samples"), array("reason" => "Missing collection date on specimen / request form."), array("reason" => "Name and signature of requester missing"), array("reason" => "Mismatched information on request form and specimen container."), array("reason" => "Request form contaminated with specimen"), array("reason" => "Duplicate specimen received"), array("reason" => "Delay between specimen collection and arrival in the laboratory"), array("reason" => "Inappropriate specimen packing"), array("reason" => "Inappropriate specimen for the test"), array("reason" => "Inappropriate test for the clinical condition"), array("reason" => "No Label"), array("reason" => "Leaking"), array("reason" => "No Sample in the Container"), array("reason" => "No Request Form"), array("reason" => "Missing Information Required"));
foreach ($rejection_reasons_array as $rejection_reason) {
$rejection_reasons[] = RejectionReason::create($rejection_reason);
}
$this->command->info('rejection_reasons seeded');
/* Specimen table */
$this->command->info('specimens seeded');
$now = new DateTime();
/* Test table */
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::NOT_RECEIVED, Specimen::NOT_COLLECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::NOT_RECEIVED, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id));
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeHB->id, "specimen_id" => $this->createSpecimen(Test::PENDING, Specimen::NOT_COLLECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::PENDING, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id));
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeGXM->id, "specimen_id" => $this->createSpecimen(Test::PENDING, Specimen::NOT_COLLECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::PENDING, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id));
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::PENDING, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::PENDING, "created_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Dr. Abou Meyang"));
$test_gxm_accepted_completed = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeGXM->id, "specimen_id" => $this->createSpecimen(Test::COMPLETED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "interpretation" => "Perfect match.", "test_status_id" => Test::COMPLETED, "created_by" => $users[rand(0, count($users) - 1)]->id, "tested_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Dr. Abou Meyang", "time_started" => $now->format('Y-m-d H:i:s'), "time_completed" => $now->add(new DateInterval('PT12M8S'))->format('Y-m-d H:i:s')));
$test_hb_accepted_completed = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeHB->id, "specimen_id" => $this->createSpecimen(Test::COMPLETED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "interpretation" => "Do nothing!", "test_status_id" => Test::COMPLETED, "created_by" => $users[rand(0, count($users) - 1)]->id, "tested_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Genghiz Khan", "time_started" => $now->format('Y-m-d H:i:s'), "time_completed" => $now->add(new DateInterval('PT5M23S'))->format('Y-m-d H:i:s')));
$tests_accepted_started = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeGXM->id, "specimen_id" => $this->createSpecimen(Test::STARTED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::STARTED, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id, "time_started" => $now->format('Y-m-d H:i:s')));
$tests_accepted_completed = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::COMPLETED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "interpretation" => "Positive", "test_status_id" => Test::COMPLETED, "created_by" => $users[rand(0, count($users) - 1)]->id, "tested_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Ariel Smith", "time_started" => $now->format('Y-m-d H:i:s'), "time_completed" => $now->add(new DateInterval('PT7M34S'))->format('Y-m-d H:i:s')));
$tests_accepted_verified = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::VERIFIED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "interpretation" => "Very high concentration of parasites.", "test_status_id" => Test::VERIFIED, "created_by" => $users[rand(0, count($users) - 1)]->id, "tested_by" => $users[rand(0, count($users) - 1)]->id, "verified_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Genghiz Khan", "time_started" => $now, "time_completed" => $now->add(new DateInterval('PT5M17S'))->format('Y-m-d H:i:s'), "time_verified" => $now->add(new DateInterval('PT112M33S'))->format('Y-m-d H:i:s')));
$tests_rejected_pending = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::PENDING, Specimen::REJECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id, $users[rand(0, count($users) - 1)]->id, $rejection_reasons[rand(0, count($rejection_reasons) - 1)]->id), "test_status_id" => Test::PENDING, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id, "time_started" => $now->format('Y-m-d H:i:s')));
// WBC Started
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeWBC->id, "specimen_id" => $this->createSpecimen(Test::STARTED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::PENDING, "requested_by" => "Fred Astaire", "created_by" => $users[rand(0, count($users) - 1)]->id));
$tests_rejected_started = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::STARTED, Specimen::REJECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id, $users[rand(0, count($users) - 1)]->id, $rejection_reasons[rand(0, count($rejection_reasons) - 1)]->id), "test_status_id" => Test::STARTED, "created_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Bony Em", "time_started" => $now->format('Y-m-d H:i:s')));
$tests_rejected_completed = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::COMPLETED, Specimen::REJECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id, $users[rand(0, count($users) - 1)]->id, $rejection_reasons[rand(0, count($rejection_reasons) - 1)]->id), "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => $users[rand(0, count($users) - 1)]->id, "tested_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Ed Buttler", "time_started" => $now->format('Y-m-d H:i:s'), "time_completed" => $now->add(new DateInterval('PT30M4S'))->format('Y-m-d H:i:s')));
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeUrinalysis->id, "specimen_id" => $this->createSpecimen(Test::PENDING, Specimen::NOT_COLLECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::PENDING, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id));
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeWBC->id, "specimen_id" => $this->createSpecimen(Test::PENDING, Specimen::NOT_COLLECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::PENDING, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id));
$test_urinalysis_accepted_completed = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeUrinalysis->id, "specimen_id" => $this->createSpecimen(Test::COMPLETED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "interpretation" => "Whats this !!!! ###%%% ^ *() /", "test_status_id" => Test::COMPLETED, "created_by" => $users[rand(0, count($users) - 1)]->id, "tested_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Dr. Abou Meyang", "time_started" => $now->format('Y-m-d H:i:s'), "time_completed" => $now->add(new DateInterval('PT12M8S'))->format('Y-m-d H:i:s'), "external_id" => 596699));
$this->command->info('tests seeded');
/* Test Results table */
$testResults = array(array("test_id" => $tests_accepted_verified->id, "measure_id" => $measureBSforMPS->id, "result" => "+++"), array("test_id" => $tests_accepted_completed->id, "measure_id" => $measureBSforMPS->id, "result" => "++"), array("test_id" => $test_gxm_accepted_completed->id, "measure_id" => $measureGXM->id, "result" => "COMPATIBLE WITH 061832914 B/G A POS.EXPIRY19/8/14"), array("test_id" => $test_gxm_accepted_completed->id, "measure_id" => $measureBG->id, "result" => "A+"), array("test_id" => $test_hb_accepted_completed->id, "measure_id" => $measureHB->id, "result" => "13.7"), array("test_id" => $tests_rejected_completed->id, "measure_id" => $measureBSforMPS->id, "result" => "No mps seen"));
foreach ($measuresUrinalysis as $key => $measure) {
$testResults[] = array("test_id" => $test_urinalysis_accepted_completed->id, "measure_id" => $measure->id, "result" => $key . "50");
}
foreach ($testResults as $testResult) {
TestResult::create($testResult);
}
$this->command->info('test results seeded');
/* Permissions table */
$permissions = array(array("name" => "view_names", "display_name" => "Can view patient names"), array("name" => "manage_patients", "display_name" => "Can add patients"), array("name" => "receive_external_test", "display_name" => "Can receive test requests"), array("name" => "request_test", "display_name" => "Can request new test"), array("name" => "accept_test_specimen", "display_name" => "Can accept test specimen"), array("name" => "reject_test_specimen", "display_name" => "Can reject test specimen"), array("name" => "change_test_specimen", "display_name" => "Can change test specimen"), array("name" => "start_test", "display_name" => "Can start tests"), array("name" => "enter_test_results", "display_name" => "Can enter tests results"), array("name" => "edit_test_results", "display_name" => "Can edit test results"), array("name" => "verify_test_results", "display_name" => "Can verify test results"), array("name" => "send_results_to_external_system", "display_name" => "Can send test results to external systems"), array("name" => "refer_specimens", "display_name" => "Can refer specimens"), array("name" => "manage_users", "display_name" => "Can manage users"), array("name" => "manage_test_catalog", "display_name" => "Can manage test catalog"), array("name" => "manage_lab_configurations", "display_name" => "Can manage lab configurations"), array("name" => "view_reports", "display_name" => "Can view reports"), array("name" => "manage_inventory", "display_name" => "Can manage inventory"), array("name" => "request_topup", "display_name" => "Can request top-up"), array("name" => "manage_qc", "display_name" => "Can manage Quality Control"));
foreach ($permissions as $permission) {
Permission::create($permission);
}
$this->command->info('Permissions table seeded');
/* Roles table */
$roles = array(array("name" => "Superadmin"), array("name" => "Technologist"), array("name" => "Receptionist"));
foreach ($roles as $role) {
Role::create($role);
}
$this->command->info('Roles table seeded');
$user1 = User::find(1);
$role1 = Role::find(1);
$permissions = Permission::all();
//Assign all permissions to role administrator
foreach ($permissions as $permission) {
$role1->attachPermission($permission);
}
//Assign role Administrator to user 1 administrator
$user1->attachRole($role1);
/* Instruments table */
$instrumentsData = array("name" => "Celltac F Mek 8222", "description" => "Automatic analyzer with 22 parameters and WBC 5 part diff Hematology Analyzer", "driver_name" => "KBLIS\\Plugins\\CelltacFMachine", "ip" => "192.168.1.12", "hostname" => "HEMASERVER");
$instrument = Instrument::create($instrumentsData);
$instrument->testTypes()->attach(array($testTypeWBC->id));
$this->command->info('Instruments table seeded');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596699,"parentLabNo":0,"requestingClinician":"frankenstein Dr",
"investigation":"Urinalysis","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596700,"parentLabNo":596699,"requestingClinician":"frankenstein Dr",
"investigation":"Urine microscopy","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596701,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"Pus cells","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596702,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"S. haematobium","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596703,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"T. vaginalis","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596704,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"Yeast cells","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596705,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"Red blood cells","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596706,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"Bacteria","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596707,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"Spermatozoa","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596708,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"Epithelial cells","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596709,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"ph","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596710,"parentLabNo":596699,"requestingClinician":"frankenstein Dr",
"investigation":"Urine chemistry","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596711,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"Glucose","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596712,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"Ketones","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596713,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"Proteins","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596714,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"Blood","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596715,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"Bilirubin","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596716,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"Urobilinogen Phenlpyruvic acid","requestDate":"2014-10-14 10:20:37","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596717,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"pH","requestDate":"2014-10-14 10:20:37","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
for ($i = 0; $i < count($labRequestUrinalysis); $i++) {
$dumper = new ExternalDump();
$dumper->lab_no = $labRequestUrinalysis[$i]->labNo;
$dumper->parent_lab_no = $labRequestUrinalysis[$i]->parentLabNo;
$dumper->test_id = $i == 0 ? $test_urinalysis_accepted_completed->id : null;
$dumper->requesting_clinician = $labRequestUrinalysis[$i]->requestingClinician;
$dumper->investigation = $labRequestUrinalysis[$i]->investigation;
$dumper->provisional_diagnosis = '';
$dumper->request_date = $labRequestUrinalysis[$i]->requestDate;
$dumper->order_stage = $labRequestUrinalysis[$i]->orderStage;
$dumper->patient_visit_number = $labRequestUrinalysis[$i]->patientVisitNumber;
$dumper->patient_id = $labRequestUrinalysis[$i]->patient->id;
$dumper->full_name = $labRequestUrinalysis[$i]->patient->fullName;
$dumper->dob = $labRequestUrinalysis[$i]->patient->dateOfBirth;
$dumper->gender = $labRequestUrinalysis[$i]->patient->gender;
$dumper->address = $labRequestUrinalysis[$i]->address->address;
$dumper->postal_code = '';
$dumper->phone_number = $labRequestUrinalysis[$i]->address->phoneNumber;
$dumper->city = $labRequestUrinalysis[$i]->address->city;
$dumper->cost = $labRequestUrinalysis[$i]->cost;
$dumper->receipt_number = $labRequestUrinalysis[$i]->receiptNumber;
$dumper->receipt_type = $labRequestUrinalysis[$i]->receiptType;
$dumper->waiver_no = '';
$dumper->system_id = "sanitas";
$dumper->save();
}
$this->command->info('ExternalDump table seeded');
// Begin seed for prevalence rates report
/* Test Categories table - These map on to the lab sections */
$lab_section_hematology = TestCategory::create(array("name" => "HEMATOLOGY", "description" => ""));
$lab_section_serology = TestCategory::create(array("name" => "SEROLOGY", "description" => ""));
$lab_section_trans = TestCategory::create(array("name" => "BLOOD TRANSFUSION", "description" => ""));
$this->command->info('Lab Sections seeded');
/* Test Types for prevalence */
$test_types_salmonella = TestType::create(array("name" => "Salmonella Antigen Test", "test_category_id" => $test_categories->id));
$test_types_direct = TestType::create(array("name" => "Direct COOMBS Test", "test_category_id" => $lab_section_trans->id));
$test_types_du = TestType::create(array("name" => "DU Test", "test_category_id" => $lab_section_trans->id));
$test_types_sickling = TestType::create(array("name" => "Sickling Test", "test_category_id" => $lab_section_hematology->id));
$test_types_borrelia = TestType::create(array("name" => "Borrelia", "test_category_id" => $test_categories->id));
$test_types_vdrl = TestType::create(array("name" => "VDRL", "test_category_id" => $lab_section_serology->id));
$test_types_pregnancy = TestType::create(array("name" => "Pregnancy Test", "test_category_id" => $lab_section_serology->id));
$test_types_brucella = TestType::create(array("name" => "Brucella", "test_category_id" => $lab_section_serology->id));
$test_types_pylori = TestType::create(array("name" => "H. Pylori", "test_category_id" => $lab_section_serology->id));
$this->command->info('Test Types seeded');
/* Test Types and specimen types relationship for prevalence */
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_salmonella->id, "13"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_direct->id, "23"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_du->id, "23"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_sickling->id, "23"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_borrelia->id, "23"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_vdrl->id, "13"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_pregnancy->id, "20"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_brucella->id, "13"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_pylori->id, "13"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($testTypeStoolCS->id, "16"));
$this->command->info('TestTypes/SpecimenTypes seeded');
/*New measures for prevalence*/
$measure_salmonella = Measure::create(array("measure_type_id" => "2", "name" => "Salmonella Antigen Test", "unit" => ""));
$measure_direct = Measure::create(array("measure_type_id" => "2", "name" => "Direct COOMBS Test", "unit" => ""));
$measure_du = Measure::create(array("measure_type_id" => "2", "name" => "Du Test", "unit" => ""));
$measure_sickling = Measure::create(array("measure_type_id" => "2", "name" => "Sickling Test", "unit" => ""));
$measure_borrelia = Measure::create(array("measure_type_id" => "2", "name" => "Borrelia", "unit" => ""));
$measure_vdrl = Measure::create(array("measure_type_id" => "2", "name" => "VDRL", "unit" => ""));
$measure_pregnancy = Measure::create(array("measure_type_id" => "2", "name" => "Pregnancy Test", "unit" => ""));
$measure_brucella = Measure::create(array("measure_type_id" => "2", "name" => "Brucella", "unit" => ""));
$measure_pylori = Measure::create(array("measure_type_id" => "2", "name" => "H. Pylori", "unit" => ""));
MeasureRange::create(array("measure_id" => $measure_salmonella->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_salmonella->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_direct->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_direct->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_du->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_du->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_sickling->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_sickling->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_borrelia->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_borrelia->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_vdrl->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_vdrl->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_pregnancy->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_pregnancy->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_brucella->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_brucella->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_pylori->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_pylori->id, "alphanumeric" => "Negative"));
$this->command->info('Measures seeded again');
/* TestType Measure for prevalence */
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_salmonella->id, "measure_id" => $measure_salmonella->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_direct->id, "measure_id" => $measure_direct->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_du->id, "measure_id" => $measure_du->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_sickling->id, "measure_id" => $measure_sickling->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_borrelia->id, "measure_id" => $measure_borrelia->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_vdrl->id, "measure_id" => $measure_vdrl->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_pregnancy->id, "measure_id" => $measure_pregnancy->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_brucella->id, "measure_id" => $measure_brucella->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_pylori->id, "measure_id" => $measure_pylori->id));
$this->command->info('Test Type Measures seeded again');
/* Tests for prevalence rates */
$tests_completed_one = Test::create(array("visit_id" => "1", "test_type_id" => $test_types_salmonella->id, "specimen_id" => "4", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-07-23 15:16:15", "time_started" => "2014-07-23 16:07:15", "time_completed" => "2014-07-23 16:17:19"));
$tests_completed_two = Test::create(array("visit_id" => "2", "test_type_id" => $test_types_direct->id, "specimen_id" => "3", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-07-26 10:16:15", "time_started" => "2014-07-26 13:27:15", "time_completed" => "2014-07-26 13:57:01"));
$tests_completed_three = Test::create(array("visit_id" => "3", "test_type_id" => $test_types_du->id, "specimen_id" => "2", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-08-13 09:16:15", "time_started" => "2014-08-13 10:07:15", "time_completed" => "2014-08-13 10:18:11"));
$tests_completed_four = Test::create(array("visit_id" => "4", "test_type_id" => $test_types_sickling->id, "specimen_id" => "1", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-08-16 09:06:53", "time_started" => "2014-08-16 09:09:15", "time_completed" => "2014-08-16 09:23:37"));
$tests_completed_five = Test::create(array("visit_id" => "5", "test_type_id" => $test_types_borrelia->id, "specimen_id" => "1", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-08-23 10:16:15", "time_started" => "2014-08-23 11:54:39", "time_completed" => "2014-08-23 12:07:18"));
$tests_completed_six = Test::create(array("visit_id" => "6", "test_type_id" => $test_types_vdrl->id, "specimen_id" => "2", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-09-07 07:23:15", "time_started" => "2014-09-07 08:07:20", "time_completed" => "2014-09-07 08:41:13"));
$tests_completed_seven = Test::create(array("visit_id" => "7", "test_type_id" => $test_types_pregnancy->id, "specimen_id" => "3", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-10-03 11:52:15", "time_started" => "2014-10-03 12:31:04", "time_completed" => "2014-10-03 12:45:18"));
$tests_completed_eight = Test::create(array("visit_id" => "1", "test_type_id" => $test_types_brucella->id, "specimen_id" => "4", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-10-15 17:01:15", "time_started" => "2014-10-15 17:05:24", "time_completed" => "2014-10-15 18:07:15"));
$tests_completed_nine = Test::create(array("visit_id" => "2", "test_type_id" => $test_types_pylori->id, "specimen_id" => "4", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-10-23 16:06:15", "time_started" => "2014-10-23 16:07:15", "time_completed" => "2014-10-23 16:39:02"));
$tests_completed_ten = Test::create(array("visit_id" => "4", "test_type_id" => $test_types_salmonella->id, "specimen_id" => "3", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-10-21 19:16:15", "time_started" => "2014-10-21 19:17:15", "time_completed" => "2014-10-21 19:52:40"));
$tests_verified_one = Test::create(array("visit_id" => "3", "test_type_id" => $test_types_direct->id, "specimen_id" => "2", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-07-21 19:16:15", "time_started" => "2014-07-21 19:17:15", "time_completed" => "2014-07-21 19:52:40", "time_verified" => "2014-07-21 19:53:48"));
$tests_verified_two = Test::create(array("visit_id" => "2", "test_type_id" => $test_types_du->id, "specimen_id" => "1", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-08-21 19:16:15", "time_started" => "2014-08-21 19:17:15", "time_completed" => "2014-08-21 19:52:40", "time_verified" => "2014-08-21 19:53:48"));
$tests_verified_three = Test::create(array("visit_id" => "3", "test_type_id" => $test_types_sickling->id, "specimen_id" => "4", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-08-26 19:16:15", "time_started" => "2014-08-26 19:17:15", "time_completed" => "2014-08-26 19:52:40", "time_verified" => "2014-08-26 19:53:48"));
$tests_verified_four = Test::create(array("visit_id" => "4", "test_type_id" => $test_types_borrelia->id, "specimen_id" => "2", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-09-21 19:16:15", "time_started" => "2014-09-21 19:17:15", "time_completed" => "2014-09-21 19:52:40", "time_verified" => "2014-09-21 19:53:48"));
$tests_verified_five = Test::create(array("visit_id" => "1", "test_type_id" => $test_types_vdrl->id, "specimen_id" => "3", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-09-22 19:16:15", "time_started" => "2014-09-22 19:17:15", "time_completed" => "2014-09-22 19:52:40", "time_verified" => "2014-09-22 19:53:48"));
$tests_verified_six = Test::create(array("visit_id" => "1", "test_type_id" => $test_types_pregnancy->id, "specimen_id" => "4", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-09-23 19:16:15", "time_started" => "2014-09-23 19:17:15", "time_completed" => "2014-09-23 19:52:40", "time_verified" => "2014-09-23 19:53:48"));
$tests_verified_seven = Test::create(array("visit_id" => "1", "test_type_id" => $test_types_brucella->id, "specimen_id" => "2", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-09-27 19:16:15", "time_started" => "2014-09-27 19:17:15", "time_completed" => "2014-09-27 19:52:40", "time_verified" => "2014-09-27 19:53:48"));
$tests_verified_eight = Test::create(array("visit_id" => "3", "test_type_id" => $test_types_pylori->id, "specimen_id" => "4", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-10-22 19:16:15", "time_started" => "2014-10-22 19:17:15", "time_completed" => "2014-10-22 19:52:40", "time_verified" => "2014-10-22 19:53:48"));
$tests_verified_nine = Test::create(array("visit_id" => "4", "test_type_id" => $test_types_pregnancy->id, "specimen_id" => "3", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-10-17 19:16:15", "time_started" => "2014-10-17 19:17:15", "time_completed" => "2014-10-17 19:52:40", "time_verified" => "2014-10-17 19:53:48"));
$tests_verified_ten = Test::create(array("visit_id" => "2", "test_type_id" => $test_types_pregnancy->id, "specimen_id" => "1", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-10-02 19:16:15", "time_started" => "2014-10-02 19:17:15", "time_completed" => "2014-10-02 19:52:40", "time_verified" => "2014-10-02 19:53:48"));
$this->command->info('Tests seeded again');
// Test results for prevalence
$results = array(array("test_id" => $tests_completed_one->id, "measure_id" => $measure_salmonella->id, "result" => "Positive"), array("test_id" => $tests_completed_two->id, "measure_id" => $measure_direct->id, "result" => "Positive"), array("test_id" => $tests_completed_three->id, "measure_id" => $measure_du->id, "result" => "Positive"), array("test_id" => $tests_completed_four->id, "measure_id" => $measure_sickling->id, "result" => "Positive"), array("test_id" => $tests_completed_five->id, "measure_id" => $measure_borrelia->id, "result" => "Positive"), array("test_id" => $tests_completed_six->id, "measure_id" => $measure_vdrl->id, "result" => "Positive"), array("test_id" => $tests_completed_seven->id, "measure_id" => $measure_pregnancy->id, "result" => "Positive"), array("test_id" => $tests_completed_eight->id, "measure_id" => $measure_brucella->id, "result" => "Positive"), array("test_id" => $tests_completed_nine->id, "measure_id" => $measure_pylori->id, "result" => "Positive"), array("test_id" => $tests_completed_ten->id, "measure_id" => $measure_salmonella->id, "result" => "Positive"), array("test_id" => $tests_verified_one->id, "measure_id" => $measure_direct->id, "result" => "Negative"), array("test_id" => $tests_verified_two->id, "measure_id" => $measure_du->id, "result" => "Positive"), array("test_id" => $tests_verified_three->id, "measure_id" => $measure_sickling->id, "result" => "Positive"), array("test_id" => $tests_verified_four->id, "measure_id" => $measure_borrelia->id, "result" => "Negative"), array("test_id" => $tests_verified_five->id, "measure_id" => $measure_vdrl->id, "result" => "Negative"), array("test_id" => $tests_verified_six->id, "measure_id" => $measure_pregnancy->id, "result" => "Negative"), array("test_id" => $tests_verified_seven->id, "measure_id" => $measure_brucella->id, "result" => "Positive"), array("test_id" => $tests_verified_eight->id, "measure_id" => $measure_pylori->id, "result" => "Positive"), array("test_id" => $tests_verified_nine->id, "measure_id" => $measure_pregnancy->id, "result" => "Negative"), array("test_id" => $tests_verified_ten->id, "measure_id" => $measure_pregnancy->id, "result" => "Positive"));
foreach ($results as $result) {
TestResult::create($result);
}
$this->command->info('Test results seeded again');
// End prevalence rates seed
//Seed for facilities
$facilitiesSeed = array(array('name' => "WALTER REED"), array('name' => "AGA KHAN UNIVERSITY HOSPITAL"), array('name' => "TEL AVIV GENERAL HOSPITAL"), array('name' => "GK PRISON DISPENSARY"), array('name' => "KEMRI ALUPE"), array('name' => "AMPATH"));
foreach ($facilitiesSeed as $facility) {
Facility::create($facility);
}
$this->command->info('Facilities table seeded');
//Seed for suppliers
$supplier = Supplier::create(array("name" => "UNICEF", "phone_no" => "0775112233", "email" => "*****@*****.**", "physical_address" => "un-hqtr"));
$this->command->info('Suppliers table seeded');
//Seed for metrics
$metric = Metric::create(array("name" => "mg", "description" => "milligram"));
$this->command->info('Metrics table seeded');
//Seed for commodities
$commodity = Commodity::create(array("name" => "Ampicillin", "description" => "Capsule 250mg", "metric_id" => $metric->id, "unit_price" => "500", "item_code" => "no clue", "storage_req" => "no clue", "min_level" => "100000", "max_level" => "400000"));
$this->command->info('Commodities table seeded');
//Seed for receipts
$receipt = Receipt::create(array("commodity_id" => $commodity->id, "supplier_id" => $supplier->id, "quantity" => "130000", "batch_no" => "002720", "expiry_date" => "2018-10-14", "user_id" => "1"));
$this->command->info('Receipts table seeded');
//Seed for Top Up Request
$topUpRequest = TopupRequest::create(array("commodity_id" => $commodity->id, "test_category_id" => 1, "order_quantity" => "1500", "user_id" => 1, "remarks" => "-"));
$this->command->info('Top Up Requests table seeded');
//Seed for Issues
Issue::create(array("receipt_id" => $receipt->id, "topup_request_id" => $topUpRequest->id, "quantity_issued" => "1700", "issued_to" => 1, "user_id" => 1, "remarks" => "-"));
$this->command->info('Issues table seeded');
//Seed for diseases
$malaria = Disease::create(array('name' => "Malaria"));
$typhoid = Disease::create(array('name' => "Typhoid"));
$dysentry = Disease::create(array('name' => "Shigella Dysentry"));
$this->command->info("Dieases table seeded");
$reportDiseases = array(array("test_type_id" => $testTypeBS->id, "disease_id" => $malaria->id), array("test_type_id" => $test_types_salmonella->id, "disease_id" => $typhoid->id), array("test_type_id" => $testTypeStoolCS->id, "disease_id" => $dysentry->id));
foreach ($reportDiseases as $reportDisease) {
ReportDisease::create($reportDisease);
}
$this->command->info("Report Disease table seeded");
//Seeding for QC
$lots = array(array('number' => '0001', 'description' => 'First lot', 'expiry' => date('Y-m-d H:i:s', strtotime("+6 months")), 'instrument_id' => 1), array('number' => '0002', 'description' => 'Second lot', 'expiry' => date('Y-m-d H:i:s', strtotime("+7 months")), 'instrument_id' => 1));
foreach ($lots as $lot) {
$lot = Lot::create($lot);
}
$this->command->info("Lot table seeded");
//Control seeding
$controls = array(array('name' => 'Humatrol P', 'description' => 'HUMATROL P control serum has been designed to provide a suitable basis for the quality control (imprecision, inaccuracy) in the clinical chemical laboratory.', 'lot_id' => 1), array('name' => 'Full Blood Count', 'description' => 'Né pas touchér', 'lot_id' => 1));
foreach ($controls as $control) {
Control::create($control);
}
$this->command->info("Control table seeded");
//Control measures
$controlMeasures = array(array('name' => 'ca', 'unit' => 'mmol', 'control_id' => 1, 'control_measure_type_id' => 1), array('name' => 'pi', 'unit' => 'mmol', 'control_id' => 1, 'control_measure_type_id' => 1), array('name' => 'mg', 'unit' => 'mmol', 'control_id' => 1, 'control_measure_type_id' => 1), array('name' => 'na', 'unit' => 'mmol', 'control_id' => 1, 'control_measure_type_id' => 1), array('name' => 'K', 'unit' => 'mmol', 'control_id' => 1, 'control_measure_type_id' => 1), array('name' => 'WBC', 'unit' => 'x 103/uL', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'RBC', 'unit' => 'x 106/uL', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'HGB', 'unit' => 'g/dl', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'HCT', 'unit' => '%', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'MCV', 'unit' => 'fl', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'MCH', 'unit' => 'pg', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'MCHC', 'unit' => 'g/dl', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'PLT', 'unit' => 'x 103/uL', 'control_id' => 2, 'control_measure_type_id' => 1));
foreach ($controlMeasures as $controlMeasure) {
ControlMeasure::create($controlMeasure);
}
$this->command->info("Control Measure table seeded");
//Control measure ranges
$controlMeasureRanges = array(array('upper_range' => '2.63', 'lower_range' => '7.19', 'control_measure_id' => 1), array('upper_range' => '11.65', 'lower_range' => '15.43', 'control_measure_id' => 2), array('upper_range' => '12.13', 'lower_range' => '19.11', 'control_measure_id' => 3), array('upper_range' => '15.73', 'lower_range' => '25.01', 'control_measure_id' => 4), array('upper_range' => '17.63', 'lower_range' => '20.12', 'control_measure_id' => 5), array('upper_range' => '6.5', 'lower_range' => '7.5', 'control_measure_id' => 6), array('upper_range' => '4.36', 'lower_range' => '5.78', 'control_measure_id' => 7), array('upper_range' => '13.8', 'lower_range' => '17.3', 'control_measure_id' => 8), array('upper_range' => '81.0', 'lower_range' => '95.0', 'control_measure_id' => 9), array('upper_range' => '1.99', 'lower_range' => '2.63', 'control_measure_id' => 10), array('upper_range' => '27.6', 'lower_range' => '33.0', 'control_measure_id' => 11), array('upper_range' => '32.8', 'lower_range' => '36.4', 'control_measure_id' => 12), array('upper_range' => '141', 'lower_range' => ' 320.0', 'control_measure_id' => 13));
foreach ($controlMeasureRanges as $controlMeasureRange) {
ControlMeasureRange::create($controlMeasureRange);
}
$this->command->info("Control Measure ranges table seeded");
//Control Tests
$controlTests = array(array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-10 days'))), array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-9 days'))), array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-8 days'))), array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-7 days'))), array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-6 days'))), array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-5 days'))), array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-4 days'))), array('entered_by' => 1, 'control_id' => 2, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('entered_by' => 1, 'control_id' => 2, 'created_at' => date('Y-m-d', strtotime('-2 days'))));
foreach ($controlTests as $controltest) {
ControlTest::create($controltest);
}
$this->command->info("Control test table seeded");
//Control results
$controlResults = array(array('results' => '2.78', 'control_measure_id' => 1, 'control_test_id' => 1, 'created_at' => date('Y-m-d', strtotime('-10 days'))), array('results' => '13.56', 'control_measure_id' => 2, 'control_test_id' => 1, 'created_at' => date('Y-m-d', strtotime('-10 days'))), array('results' => '14.77', 'control_measure_id' => 3, 'control_test_id' => 1, 'created_at' => date('Y-m-d', strtotime('-10 days'))), array('results' => '25.92', 'control_measure_id' => 4, 'control_test_id' => 1, 'created_at' => date('Y-m-d', strtotime('-10 days'))), array('results' => '18.87', 'control_measure_id' => 5, 'control_test_id' => 1, 'created_at' => date('Y-m-d', strtotime('-10 days'))), array('results' => '6.78', 'control_measure_id' => 1, 'control_test_id' => 2, 'created_at' => date('Y-m-d', strtotime('-9 days'))), array('results' => '15.56', 'control_measure_id' => 2, 'control_test_id' => 2, 'created_at' => date('Y-m-d', strtotime('-9 days'))), array('results' => '18.77', 'control_measure_id' => 3, 'control_test_id' => 2, 'created_at' => date('Y-m-d', strtotime('-9 days'))), array('results' => '30.92', 'control_measure_id' => 4, 'control_test_id' => 2, 'created_at' => date('Y-m-d', strtotime('-9 days'))), array('results' => '17.87', 'control_measure_id' => 5, 'control_test_id' => 2, 'created_at' => date('Y-m-d', strtotime('-9 days'))), array('results' => '8.78', 'control_measure_id' => 1, 'control_test_id' => 3, 'created_at' => date('Y-m-d', strtotime('-8 days'))), array('results' => '17.56', 'control_measure_id' => 2, 'control_test_id' => 3, 'created_at' => date('Y-m-d', strtotime('-8 days'))), array('results' => '21.77', 'control_measure_id' => 3, 'control_test_id' => 3, 'created_at' => date('Y-m-d', strtotime('-8 days'))), array('results' => '27.92', 'control_measure_id' => 4, 'control_test_id' => 3, 'created_at' => date('Y-m-d', strtotime('-8 days'))), array('results' => '22.87', 'control_measure_id' => 5, 'control_test_id' => 3, 'created_at' => date('Y-m-d', strtotime('-8 days'))), array('results' => '6.78', 'control_measure_id' => 1, 'control_test_id' => 4, 'created_at' => date('Y-m-d', strtotime('-7 days'))), array('results' => '18.56', 'control_measure_id' => 2, 'control_test_id' => 4, 'created_at' => date('Y-m-d', strtotime('-7 days'))), array('results' => '19.77', 'control_measure_id' => 3, 'control_test_id' => 4, 'created_at' => date('Y-m-d', strtotime('-7 days'))), array('results' => '12.92', 'control_measure_id' => 4, 'control_test_id' => 4, 'created_at' => date('Y-m-d', strtotime('-7 days'))), array('results' => '22.87', 'control_measure_id' => 5, 'control_test_id' => 4, 'created_at' => date('Y-m-d', strtotime('-7 days'))), array('results' => '3.78', 'control_measure_id' => 1, 'control_test_id' => 5, 'created_at' => date('Y-m-d', strtotime('-6 days'))), array('results' => '16.56', 'control_measure_id' => 2, 'control_test_id' => 5, 'created_at' => date('Y-m-d', strtotime('-6 days'))), array('results' => '17.77', 'control_measure_id' => 3, 'control_test_id' => 5, 'created_at' => date('Y-m-d', strtotime('-6 days'))), array('results' => '28.92', 'control_measure_id' => 4, 'control_test_id' => 5, 'created_at' => date('Y-m-d', strtotime('-6 days'))), array('results' => '19.87', 'control_measure_id' => 5, 'control_test_id' => 5, 'created_at' => date('Y-m-d', strtotime('-6 days'))), array('results' => '5.78', 'control_measure_id' => 1, 'control_test_id' => 6, 'created_at' => date('Y-m-d', strtotime('-5 days'))), array('results' => '15.56', 'control_measure_id' => 2, 'control_test_id' => 6, 'created_at' => date('Y-m-d', strtotime('-5 days'))), array('results' => '11.77', 'control_measure_id' => 3, 'control_test_id' => 6, 'created_at' => date('Y-m-d', strtotime('-5 days'))), array('results' => '29.92', 'control_measure_id' => 4, 'control_test_id' => 6, 'created_at' => date('Y-m-d', strtotime('-5 days'))), array('results' => '14.87', 'control_measure_id' => 5, 'control_test_id' => 6, 'created_at' => date('Y-m-d', strtotime('-5 days'))), array('results' => '9.78', 'control_measure_id' => 1, 'control_test_id' => 7, 'created_at' => date('Y-m-d', strtotime('-4 days'))), array('results' => '11.56', 'control_measure_id' => 2, 'control_test_id' => 7, 'created_at' => date('Y-m-d', strtotime('-4 days'))), array('results' => '19.77', 'control_measure_id' => 3, 'control_test_id' => 7, 'created_at' => date('Y-m-d', strtotime('-4 days'))), array('results' => '32.92', 'control_measure_id' => 4, 'control_test_id' => 7, 'created_at' => date('Y-m-d', strtotime('-4 days'))), array('results' => '29.87', 'control_measure_id' => 5, 'control_test_id' => 7, 'created_at' => date('Y-m-d', strtotime('-4 days'))), array('results' => '5.45', 'control_measure_id' => 6, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '5.01', 'control_measure_id' => 7, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '12.3', 'control_measure_id' => 8, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '89.7', 'control_measure_id' => 9, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '2.15', 'control_measure_id' => 10, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '34.0', 'control_measure_id' => 11, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '37.2', 'control_measure_id' => 12, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '141.5', 'control_measure_id' => 13, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '7.45', 'control_measure_id' => 6, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '9.01', 'control_measure_id' => 7, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '9.3', 'control_measure_id' => 8, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '94.7', 'control_measure_id' => 9, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '12.15', 'control_measure_id' => 10, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '37.0', 'control_measure_id' => 11, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '30.2', 'control_measure_id' => 12, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '121.5', 'control_measure_id' => 13, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))));
foreach ($controlResults as $controlResult) {
ControlMeasureResult::create($controlResult);
}
$this->command->info("Control results table seeded");
}
/**
* Get measure range with given patient patient details
*
* @return boolean
*/
public static function getRange($patient, $measureId)
{
$age = $patient->getAge('Y');
$measureRange = MeasureRange::where('measure_id', '=', $measureId)->where('age_min', '<=', $age)->where('age_max', '>=', $age);
if (count($measureRange->get()) >= 1) {
if (count($measureRange->get()) == 1) {
$lowerUpper = $measureRange->first();
} else {
if (count($measureRange->get()) > 1) {
$measureRange = $measureRange->where('gender', '=', $patient->gender);
if (count($measureRange->get()) == 1) {
$lowerUpper = $measureRange->first();
} else {
return null;
}
}
}
return "(" . $lowerUpper->range_lower . " - " . $lowerUpper->range_upper . ")";
}
return null;
}
/**
* Tests the update funtion in the MeasureController
*
* @return void
*/
public function testIfUpdateWorks()
{
//Save again because teardown() dropped the db :(
$this->runStore($this->inputNumeric);
$this->runStore($this->inputAlphanumeric);
$this->runStore($this->inputAutocomplete);
$this->runStore($this->inputFreetext);
$measurestored = Measure::orderBy('id', 'desc')->take(4)->get()->toArray();
$measureUricAcid = Measure::where('name', 'LIKE', '%uric%')->orderBy('id', 'desc')->first();
$uricMeasureRanges = array();
$alphanumericRanges = array();
$autoCompleteRanges = array();
foreach ($measureUricAcid->measureRanges as $range) {
$uricMeasureRanges[] = $range->id;
}
foreach (Measure::find($measurestored[2]['id'])->measureRanges as $range) {
$alphanumericRanges[] = $range->id;
}
foreach (Measure::find($measurestored[1]['id'])->measureRanges as $range) {
$autoCompleteRanges[] = $range->id;
}
// Update the Measure Types
// The second argument is the test type ID
$this->runUpdate($this->inputNumericUpdate, $measureUricAcid->id, $uricMeasureRanges);
$this->runUpdate($this->inputAlphanumericUpdate, $measurestored[2]['id'], $alphanumericRanges);
$this->runUpdate($this->inputAutocompleteUpdate, $measurestored[1]['id'], $autoCompleteRanges);
$this->runUpdate($this->inputFreetextUpdate, $measurestored[0]['id'], 0);
$measureupdated = Measure::orderBy('id', 'desc')->take(4)->get()->toArray();
$measureNewUricAcid = Measure::find($measureUricAcid->id);
// Check that the measure values for the uric acid measure were updated
$this->assertEquals($measureNewUricAcid->name, $this->inputNumericUpdate[0]['name']);
$this->assertEquals($measureNewUricAcid->measure_type_id, $this->inputNumericUpdate[0]['measure_type_id']);
$this->assertEquals($measureNewUricAcid->unit, $this->inputNumericUpdate[0]['unit']);
$this->assertEquals($measureNewUricAcid->description, $this->inputNumericUpdate[0]['description']);
$this->assertEquals($measureupdated[2]['name'], $this->inputAlphanumericUpdate[0]['name']);
$this->assertEquals($measureupdated[2]['measure_type_id'], $this->inputAlphanumericUpdate[0]['measure_type_id']);
$this->assertEquals($measureupdated[2]['description'], $this->inputAlphanumericUpdate[0]['description']);
$this->assertEquals($measureupdated[1]['name'], $this->inputAutocompleteUpdate[0]['name']);
$this->assertEquals($measureupdated[1]['measure_type_id'], $this->inputAutocompleteUpdate[0]['measure_type_id']);
$this->assertEquals($measureupdated[1]['description'], $this->inputAutocompleteUpdate[0]['description']);
$this->assertEquals($measureupdated[0]['name'], $this->inputFreetextUpdate[0]['name']);
$this->assertEquals($measureupdated[0]['measure_type_id'], $this->inputFreetextUpdate[0]['measure_type_id']);
$this->assertEquals($measureupdated[0]['description'], $this->inputFreetextUpdate[0]['description']);
$measurerangeupdated = MeasureRange::orderBy('id', 'desc')->take(6)->get()->toArray();
$this->assertEquals($measurerangeupdated[5]['age_min'], $this->inputNumericUpdate[0]['agemin'][0]);
$this->assertEquals($measurerangeupdated[5]['age_max'], $this->inputNumericUpdate[0]['agemax'][0]);
$this->assertEquals($measurerangeupdated[5]['gender'], $this->inputNumericUpdate[0]['gender'][0]);
$this->assertEquals($measurerangeupdated[5]['range_lower'], $this->inputNumericUpdate[0]['rangemin'][0]);
$this->assertEquals($measurerangeupdated[5]['range_upper'], $this->inputNumericUpdate[0]['rangemax'][0]);
$this->assertEquals($measurerangeupdated[4]['age_min'], $this->inputNumericUpdate[0]['agemin'][1]);
$this->assertEquals($measurerangeupdated[4]['age_max'], $this->inputNumericUpdate[0]['agemax'][1]);
$this->assertEquals($measurerangeupdated[4]['gender'], $this->inputNumericUpdate[0]['gender'][1]);
$this->assertEquals($measurerangeupdated[4]['range_lower'], $this->inputNumericUpdate[0]['rangemin'][1]);
$this->assertEquals($measurerangeupdated[4]['range_upper'], $this->inputNumericUpdate[0]['rangemax'][1]);
$this->assertEquals($measurerangeupdated[3]['alphanumeric'], $this->inputAlphanumericUpdate[0]['val'][0]);
$this->assertEquals($measurerangeupdated[2]['alphanumeric'], $this->inputAlphanumericUpdate[0]['val'][1]);
$this->assertEquals($measurerangeupdated[1]['alphanumeric'], $this->inputAutocompleteUpdate[0]['val'][0]);
$this->assertEquals($measurerangeupdated[0]['alphanumeric'], $this->inputAutocompleteUpdate[0]['val'][1]);
}
/**
* Update the specified resource in storage.
*
* @param int $id
* @return Response
*/
public function update($measure)
{
foreach ($measure as $id => $data) {
$measureTypeId = $data['measure_type_id'];
$measure = Measure::find($id);
$measure->name = trim($data['name']);
$measure->measure_type_id = $measureTypeId;
$measure->unit = $data['unit'];
$measure->description = $data['description'];
$measure->save();
if ($measureTypeId != Measure::FREETEXT) {
if ($measureTypeId == Measure::NUMERIC) {
$val['agemin'] = $data['agemin'];
$val['agemax'] = $data['agemax'];
$val['gender'] = $data['gender'];
$val['rangemin'] = $data['rangemin'];
$val['rangemax'] = $data['rangemax'];
} else {
$val['val'] = $data['val'];
}
$val['measurerangeid'] = $data['measurerangeid'];
$val['interpretation'] = $data['interpretation'];
$allRangeIDs = array();
for ($i = 0; $i < count(isset($data['agemin']) ? $val['agemin'] : $val['val']); $i++) {
if ($val['measurerangeid'][$i] == 0) {
$measurerange = new MeasureRange();
} else {
$measurerange = MeasureRange::find($val['measurerangeid'][$i]);
}
$measurerange->measure_id = $measure->id;
if ($measureTypeId == Measure::NUMERIC) {
$measurerange->age_min = $val['agemin'][$i];
$measurerange->age_max = $val['agemax'][$i];
$measurerange->gender = $val['gender'][$i];
$measurerange->range_lower = $val['rangemin'][$i];
$measurerange->range_upper = $val['rangemax'][$i];
} else {
$measurerange->alphanumeric = $val['val'][$i];
}
$measurerange->interpretation = $val['interpretation'][$i];
$measurerange->save();
$allRangeIDs[] = $measurerange->id;
}
// Delete any pre-existing ranges for this measure_id that were not captured in the above loop.
$allMeasureRanges = MeasureRange::where('measure_id', '=', $measure->id)->get(array('id'));
$deleteRanges = array();
foreach ($allMeasureRanges as $key => $value) {
if (!in_array($value->id, $allRangeIDs)) {
$deleteRanges[] = $value->id;
}
}
if (count($deleteRanges) > 0) {
MeasureRange::destroy($deleteRanges);
}
} else {
// Since this id has no ranges, delete any references to this id in the measure_range table
MeasureRange::where('measure_id', '=', $measure->id)->delete();
}
}
}