This is nust-helico, a fork of NuST (http://www.lcqb.upmc.fr/nust/) for
Helicobacter. NuST has been describe in the following paper:

Vittore F Scolari, Mina Zarei, Matteo Osella and Marco Cosentino Lagomarsino.
NuST: analysis of the interplay between nucleoid organization and
gene expression. Bioinformatics. 2012 Jun 15;28(12):1643-4.

Please read and cite also the following:

V. F. Scolari, B. Bassetti, B. Sclavi and M. Cosentino Lagomarsino.
Gene clusters reflecting macrodomain structure respond to nucleoid
perturbations. Molecular BioSystems. 7.3 (2011):878-888.

M. Zarei, B. Sclavi and M. Cosentino Lagomarsino.
Gene silencing and large-scale domain structure of the E. coli genome.
Molecular BioSystems. (2013). doi: 10.1039/C3MB25364C V. F. Scolari, B. Bassetti, B. Sclavi and M. Cosentino Lagomarsino. Gene clusters reflecting macrodomain structure respond to nucleoid perturbations. Molecular BioSystems. 7.3 (2011):878-888. doi: 10.1039/C0MB00213E


And good research!

Vittore Scolari,
Chercheur, Institut Pasteur (FRANCE)
vittore.scolari@pasteur.fr