/**
* @covers PKPSubmissionNlm30XmlFilter
*/
public function testExecute()
{
// Instantiate test meta-data for a citation.
import('lib.pkp.classes.metadata.MetadataDescription');
$nameSchemaName = 'lib.pkp.plugins.metadata.nlm30.schema.Nlm30NameSchema';
$nameDescription = new MetadataDescription($nameSchemaName, ASSOC_TYPE_AUTHOR);
$nameDescription->addStatement('given-names', $value = 'Peter');
$nameDescription->addStatement('given-names', $value = 'B');
$nameDescription->addStatement('surname', $value = 'Bork');
$nameDescription->addStatement('prefix', $value = 'Mr.');
$citationSchemaName = 'lib.pkp.plugins.metadata.nlm30.schema.Nlm30CitationSchema';
$citationDescription = new MetadataDescription($citationSchemaName, ASSOC_TYPE_CITATION);
$citationDescription->addStatement('person-group[@person-group-type="author"]', $nameDescription);
$citationDescription->addStatement('article-title', $value = 'PHPUnit in a nutshell', 'en_US');
$citationDescription->addStatement('date', $value = '2009-08-17');
$citationDescription->addStatement('size', $value = 320);
$citationDescription->addStatement('uri', $value = 'http://phpunit.org/nutshell');
$citationDescription->addStatement('[@publication-type]', $value = 'book');
$citation =& $this->getCitation($citationDescription);
// Persist a few copies of the citation for testing.
$citationDao =& $this->getCitationDao();
for ($seq = 1; $seq <= 10; $seq++) {
$citation->setSeq($seq);
$citation->setCitationState(CITATION_APPROVED);
$citationId = $citationDao->insertObject($citation);
self::assertTrue(is_numeric($citationId));
self::assertTrue($citationId > 0);
}
// Execute the filter and check the outcome.
$mockSubmission =& $this->getTestSubmission();
// FIXME: Add NLM 3.0 tag set schema validation as soon as we implement the full tag set, see #5648.
$filter = new PKPSubmissionNlm30XmlFilter(PersistableFilter::tempGroup('class::lib.pkp.classes.submission.Submission', 'xml::*'));
$nlm30Xml = $filter->execute($mockSubmission);
self::assertXmlStringEqualsXmlFile('./lib/pkp/tests/plugins/metadata/nlm30/filter/sample-nlm30-citation.xml', $nlm30Xml);
}
/**
* @covers Nlm30Nlm23CrosswalkFilter
*/
public function testExecute()
{
$this->markTestSkipped('Weird class interaction with ControlledVocabEntryDAO leads to failure');
// Instantiate test meta-data for a citation. This must use the complete
// available schema (although in practice this doesn't make sense) so that
// we can make sure all tags are correctly converted.
import('lib.pkp.classes.metadata.MetadataDescription');
$nameSchemaName = 'lib.pkp.plugins.metadata.nlm30.schema.Nlm30NameSchema';
$nameDescription = new MetadataDescription($nameSchemaName, ASSOC_TYPE_AUTHOR);
$nameDescription->addStatement('given-names', $value = 'Peter');
$nameDescription->addStatement('given-names', $value = 'B');
$nameDescription->addStatement('surname', $value = 'Bork');
$nameDescription->addStatement('prefix', $value = 'Mr.');
$nameDescription->addStatement('suffix', $value = 'Jr');
$citationSchemaName = 'lib.pkp.plugins.metadata.nlm30.schema.Nlm30CitationSchema';
$citationDescription = new MetadataDescription($citationSchemaName, ASSOC_TYPE_CITATION);
$citationDescription->addStatement('person-group[@person-group-type="author"]', $nameDescription);
$citationDescription->addStatement('person-group[@person-group-type="editor"]', $nameDescription);
$citationDescription->addStatement('article-title', $value = 'PHPUnit in a nutshell', 'en_US');
$citationDescription->addStatement('source', $value = 'PHPUnit in a nutshell', 'en_US');
$citationDescription->addStatement('date', $value = '2009-08-17');
$citationDescription->addStatement('date-in-citation[@content-type="access-date"]', $value = '2009-08');
$citationDescription->addStatement('issue', $value = 5);
$citationDescription->addStatement('volume', $value = 6);
$citationDescription->addStatement('season', $value = 'Summer');
$citationDescription->addStatement('chapter-title', $value = 'Introduction');
$citationDescription->addStatement('edition', $value = '2nd edition');
$citationDescription->addStatement('series', $value = 7);
$citationDescription->addStatement('supplement', $value = 'Summer Special');
$citationDescription->addStatement('conf-date', $value = '2009-08-17');
$citationDescription->addStatement('conf-loc', $value = 'Helsinki');
$citationDescription->addStatement('conf-name', $value = 'PHPUnit Hackfest');
$citationDescription->addStatement('conf-sponsor', $value = 'Basti himself');
$citationDescription->addStatement('institution', $value = 'PKP');
$citationDescription->addStatement('fpage', $value = 9);
$citationDescription->addStatement('lpage', $value = 312);
$citationDescription->addStatement('size', $value = 320);
$citationDescription->addStatement('publisher-loc', $value = 'Vancouver');
$citationDescription->addStatement('publisher-name', $value = 'SFU');
$citationDescription->addStatement('isbn', $value = '123456789');
$citationDescription->addStatement('issn[@pub-type="ppub"]', $value = '987654321');
$citationDescription->addStatement('issn[@pub-type="epub"]', $value = '111111111');
$citationDescription->addStatement('pub-id[@pub-id-type="doi"]', $value = '10420/39406');
$citationDescription->addStatement('pub-id[@pub-id-type="publisher-id"]', $value = 'xyz');
$citationDescription->addStatement('pub-id[@pub-id-type="coden"]', $value = 'abc');
$citationDescription->addStatement('pub-id[@pub-id-type="sici"]', $value = 'def');
$citationDescription->addStatement('pub-id[@pub-id-type="pmid"]', $value = '999999');
$citationDescription->addStatement('uri', $value = 'http://phpunit.org/nutshell');
$citationDescription->addStatement('comment', $value = 'just nonsense');
$citationDescription->addStatement('annotation', $value = 'more nonsense');
$citationDescription->addStatement('[@publication-type]', $value = 'conf-proc');
$citation =& $this->getCitation($citationDescription);
// Persist one copy of the citation for testing.
$citationDao =& $this->getCitationDao();
$citation->setSeq(1);
$citation->setCitationState(CITATION_APPROVED);
$citationId = $citationDao->insertObject($citation);
self::assertTrue(is_numeric($citationId));
self::assertTrue($citationId > 0);
// Construct the expected output.
$expectedOutput = '';
// Prepare NLM 3.0 input.
$mockSubmission =& $this->getTestSubmission();
import('lib.pkp.plugins.metadata.nlm30.filter.PKPSubmissionNlm30XmlFilter');
$nlm30Filter = new PKPSubmissionNlm30XmlFilter(PersistableFilter::tempGroup('class::lib.pkp.classes.submission.Submission', 'xml::*'));
$nlm30Xml = $nlm30Filter->execute($mockSubmission);
// Test the downgrade filter.
import('lib.pkp.classes.xslt.XSLTransformationFilter');
// FIXME: Add NLM 2.3 and 3.0 tag set schema validation as soon as we implement the full tag set, see #5648.
$downgradeFilter = new XSLTransformationFilter(PersistableFilter::tempGroup('xml::*', 'xml::*'), 'NLM 3.0 to 2.3 ref-list downgrade');
$downgradeFilter->setXSLFilename('lib/pkp/plugins/metadata/nlm30/filter/nlm30-to-23-ref-list.xsl');
$nlm30Xml = $downgradeFilter->execute($nlm30Xml);
self::assertXmlStringEqualsXmlFile('./lib/pkp/tests/plugins/metadata/nlm30/filter/sample-nlm23-citation.xml', $nlm30Xml);
}
