public function __construct()
{
parent::__construct('taxon_group');
$this->columns = array('title' => '');
$this->pagetitle = "Taxon Groups";
$this->session = Session::instance();
}
public function __construct()
{
parent::__construct('taxon_designation', 'taxon_designation/index');
$this->columns = array('id' => '', 'title' => '', 'category' => '');
$this->pagetitle = "Taxon Designations";
$this->model = ORM::factory('taxon_designation');
}
/**
* Returns an array of all values from this model ready to be loaded into a form.
* For this controller, we need to also setup text for the "other data" section.
*/
protected function getModelValues()
{
$r = parent::getModelValues();
$r['metaFields:metadata'] = $this->get_metadata_as_text();
$r['metaFields:data'] = $this->get_data_as_text();
return $r;
}
/**
* Apply the filter for the selected taxon list to the list of groups.
*/
public function index()
{
if ($this->uri->total_arguments() > 0) {
$this->taxon_list_id = $this->uri->argument(1);
$this->base_filter['taxon_list_id'] = $this->taxon_list_id;
}
parent::index();
}
/**
* Returns an array of all values from this model and its super models ready to be
* loaded into a form.
*/
protected function getModelValues()
{
$r = parent::getModelValues();
if ($this->model->parent_id) {
$r['parent_website_id'] = $this->model->parent->website_id;
}
return $r;
}
/**
* Setup the default values to use when loading this controller to edit an existing code.
*/
protected function getModelValues()
{
$r = parent::getModelValues();
// The code is linked to a taxon meaning, but we need to use this to link back to the
// preferred taxa in taxon list, so when you save it knows where to go back to.
$ttl = ORM::Factory('taxa_taxon_list')->where(array('taxon_meaning_id' => $this->model->taxon_meaning_id, 'preferred' => 'true'))->find();
$r['taxa_taxon_list:id'] = $ttl->id;
return $r;
}
/**
* Setup the default values to use when loading this controller to edit a new page.
*/
protected function getDefaults()
{
$r = parent::getDefaults();
if ($this->uri->method(false) == 'create') {
$r['known_subject:id'] = $this->uri->argument(1);
$r['known_subject_comment:known_subject_id'] = $this->uri->argument(1);
}
return $r;
}
/**
* Load default values either when creating a sample new or reloading after a validation failure.
* This adds the custom attributes list to the data available for the view.
*/
protected function getDefaults()
{
$r = parent::getDefaults();
if (array_key_exists('identifier:id', $_POST)) {
$websiteId = $r['identifier:website_id'];
$this->loadAttributes($r, array('website_id' => $websiteId));
}
return $r;
}
/**
* Setup the default values to use when loading this controller to edit a new page.
*/
protected function getDefaults()
{
$r = parent::getDefaults();
if ($this->uri->method(false) == 'create') {
$r['survey:id'] = $this->uri->argument(1);
$r['survey_comment:survey_id'] = $this->uri->argument(1);
}
return $r;
}
/**
* Setup the default values to use when loading this controller to edit a new page.
* In this case, the parent_id and website_id are passed as $_POST data if creating
* a new sublist.
*/
protected function getDefaults()
{
$r = parent::getDefaults();
if ($this->uri->method(false) == 'create' && array_key_exists('parent_id', $_POST)) {
// Parent_id is passed in as POST params for a new record.
$r['taxon_list:parent_id'] = $_POST['parent_id'];
}
return $r;
}
/**
* Setup the default values to use when loading this controller to edit a new page.
*/
protected function getDefaults()
{
$r = parent::getDefaults();
if ($this->uri->method(false) == 'create') {
// Website id is passed as first argument in URL when creating
$r['milestone:website_id'] = $this->uri->argument(1);
}
return $r;
}
/**
* Setup the default values to use when loading this controller to edit a new page.
*/
protected function getDefaults()
{
$r = parent::getDefaults();
if ($this->uri->method(false) == 'create') {
// User id is passed as first argument in URL when creating
$r['user_identifier:user_id'] = $this->uri->argument(1);
}
return $r;
}
/**
* Setup the default values to use when loading this controller to edit a new page.
*/
protected function getDefaults()
{
$r = parent::getDefaults();
if ($this->uri->method(false) == 'create') {
// Taxa taxon list id is passed as first argument in URL when creating
$ttl = ORM::Factory('taxa_taxon_list', $this->uri->argument(1));
$r['taxa_taxon_designation:taxon_id'] = $ttl->taxon_id;
}
return $r;
}
/**
* Load default values either when creating a sample new or reloading after a validation failure.
* This adds the custom attributes list to the data available for the view.
*/
protected function getDefaults()
{
$r = parent::getDefaults();
$r['joinsTo:taxa_taxon_list:id'] = $this->reformatTaxaJoinsForList($r, 'taxa_taxon_list');
if (array_key_exists('known_subject:id', $_POST)) {
$websiteId = $r['known_subject:website_id'];
$this->loadAttributes($r, array('website_id' => $websiteId));
}
return $r;
}
/**
* Setup the default values to use when loading this controller to edit a new page.
*/
protected function getDefaults()
{
$r = parent::getDefaults();
if ($this->uri->method(false) == 'create') {
// occurrence id is passed as first argument in URL when creating.
$r['occurrence:id'] = $this->uri->argument(1);
$r['occurrence_comment:occurrence_id'] = $this->uri->argument(1);
}
return $r;
}
/**
* Load default values either when creating a sample new or reloading after a validation failure.
* This adds the custome attributes list to the data available for the view.
*/
protected function getDefaults()
{
$r = parent::getDefaults();
if (array_key_exists('sample:survey_id', $_POST)) {
$r['sample:survey_id'] = $_POST['sample:survey_id'];
$r['website_id'] = ORM::factory('survey', $r['sample:survey_id'])->website_id;
$r['sample:sample_method_id'] = array_key_exists('sample:sample_method_id', $_POST) ? $_POST['sample:sample_method_id'] : null;
$this->loadAttributes($r, array('website_id' => array($r['website_id']), 'restrict_to_survey_id' => array(null, $r['sample:survey_id']), 'restrict_to_sample_method_id' => array(null, $r['sample:sample_method_id'])));
}
return $r;
}
public function save()
{
// unchecked check boxes are not in POST, so set false values.
if (!isset($_POST['occurrence:confidential'])) {
$_POST['occurrence:confidential'] = 'f';
}
if (!isset($_POST['occurrence:zero_abundance'])) {
$_POST['occurrence:zero_abundance'] = 'f';
}
parent::save();
}
/**
* Setup the default values to use when loading this controller to edit a new page.
*/
protected function getDefaults()
{
$r = parent::getDefaults();
if ($this->uri->method(false) == 'create') {
// survey id is passed as first argument in URL when creating. But the image
// gets linked by meaning, so fetch the meaning_id.
$r['survey:id'] = $this->uri->argument(1);
$r['survey_medium:survey_id'] = $this->uri->argument(1);
$r['survey_medium:caption'] = kohana::lang('misc.new_image');
}
return $r;
}
/**
* Load default values either when creating a sample new or reloading after a validation failure.
* This adds the custome attributes list to the data available for the view.
*/
protected function getDefaults()
{
$r = parent::getDefaults();
// when creating a person, we don't know the websites for the person, so cannot
// filter the attribute values available. Therefore they are not displayed until
// after the person has been saved. Therefore no need to call loadAttributes.
// We do when editing after a validation failure though.
if ($this->model->id !== 0) {
$websiteIds = $this->getWebsiteIds($this->model->id);
$this->loadAttributes($r, array('website_id' => $websiteIds));
}
return $r;
}
public function save()
{
if ($_POST['metaFields:disabled_input'] === 'NO') {
// Build the validation_rules field from the set of controls that are associated with it.
$rules = array();
foreach (array('required', 'alpha', 'email', 'url', 'alpha_numeric', 'numeric', 'standard_text', 'date_in_past', 'time', 'digit', 'integer') as $rule) {
if (array_key_exists('valid_' . $rule, $_POST) && $_POST['valid_' . $rule] == 1) {
array_push($rules, $rule);
}
}
// trim the input data, incase spaces are left in the validation parameters which would affect our tests
$_POST = array_map('trim', $_POST);
if (array_key_exists('valid_length', $_POST) && $_POST['valid_length'] == 1 && !empty($_POST['valid_length_max'])) {
$min = empty($_POST['valid_length_min']) ? '0' : $_POST['valid_length_min'];
$rules[] = 'length[' . $min . ',' . $_POST['valid_length_max'] . ']';
}
if (array_key_exists('valid_decimal', $_POST) && $_POST['valid_decimal'] == 1 && !empty($_POST['valid_dec_format'])) {
$rules[] = 'decimal[' . $_POST['valid_dec_format'] . ']';
}
if (array_key_exists('valid_regex', $_POST) && $_POST['valid_regex'] == 1 && !empty($_POST['valid_regex_format'])) {
$rules[] = 'regex[' . $_POST['valid_regex_format'] . ']';
}
if (array_key_exists('valid_min', $_POST) && $_POST['valid_min'] == 1) {
$rules[] = 'minimum[' . $_POST['valid_min_value'] . ']';
}
if (array_key_exists('valid_max', $_POST) && $_POST['valid_max'] == 1) {
$rules[] = 'maximum[' . $_POST['valid_max_value'] . ']';
}
$_POST[$this->model->object_name . ':validation_rules'] = implode("\r\n", $rules);
// Make sure checkboxes have a value as unchecked values don't appear in $_POST
// @todo: If we use Indicia client helper controls for the attribute edit page, this becomes unnecessary
if (!array_key_exists($this->model->object_name . ':public', $_POST)) {
$_POST[$this->model->object_name . ':public'] = '0';
}
if (!array_key_exists($this->model->object_name . ':multi_value', $_POST)) {
$_POST[$this->model->object_name . ':multi_value'] = '0';
}
}
parent::save();
}
/**
* Override the save method so we can convert the report parameters form into a JSON
* value to store in the triggers.json_params field.
*/
public function save()
{
// build the parameters JSON value from the params form
$params = array();
foreach ($_POST as $key => $value) {
if (substr($key, 0, 7) == 'params-') {
// The last part of the key is the field name
$tokens = explode('-', $key);
$param = array_pop($tokens);
$params[$param] = $value;
}
}
$_POST['params_json'] = json_encode($params);
parent::save();
}
/**
* Setup the default values to use when loading this controller to edit an existing relation.
*/
protected function getModelValues()
{
$r = parent::getModelValues();
// The relation is linked to a taxon meaning, but we need to use this to link back to the
// preferred taxa in taxon list, so when you save it knows where to go back to.
$ttl = ORM::Factory('taxa_taxon_list')->where(array('taxon_meaning_id' => $this->model->from_taxon_meaning_id, 'preferred' => 'true'))->find();
$r['taxa_taxon_list:id'] = $ttl->id;
// use this as default.
$t = ORM::Factory('taxon', $ttl->taxon_id);
$r['taxon:from_taxon'] = $t->taxon;
$ttl = ORM::Factory('taxa_taxon_list')->where(array('taxon_meaning_id' => $this->model->to_taxon_meaning_id, 'preferred' => 'true'))->find();
$t = ORM::Factory('taxon', $ttl->taxon_id);
$r['taxon:to_taxon'] = $t->taxon;
$tr = ORM::Factory('taxon_relation_type', $this->model->taxon_relation_type_id);
$r['relation:term'] = $tr->forward_term;
// Other entities can just look up the taxa_taxon_list id, but we have 2 so can't, so mangle the referring URL.
$referer = explode('/', $_SERVER["HTTP_REFERER"]);
for ($i = 0; $i < count($referer); $i++) {
if ($referer[$i] == 'taxa_taxon_list' && $referer[$i + 1] == 'edit') {
$value = explode('?', $referer[$i + 2]);
$r['taxa_taxon_list:id'] = $value[0];
break;
}
}
return $r;
}
/**
* Load default values either when creating a survey new or reloading after a validation failure.
* This adds the custome attributes list to the data available for the view.
*/
protected function getDefaults()
{
$r = parent::getDefaults();
$r['website_id'] = $this->model->website_id;
$this->loadAttributes($r, array('website_id' => array($r['website_id'])));
return $r;
}
public function __construct()
{
parent::__construct('summariser_definition');
$this->columns = array('title' => 'Survey title', 'website' => '');
$this->pagetitle = "Survey based data summariser definition";
}
/**
* This is the main controller action method for the index page of the grid.
*/
public function index()
{
parent::index();
$this->add_upload_shp_form();
}
/**
* Constructor
*/
public function __construct()
{
parent::__construct('language');
$this->columns = array('iso' => '', 'language' => '');
$this->pagetitle = "Languages";
}
public function save()
{
/*
// unchecked check boxes are not in POST, so set false values.
if (!isset($_POST['subject_observation:confidential']))
$_POST['subject_observation:confidential']='f';
if (!isset($_POST['subject_observation:zero_abundance']))
$_POST['subject_observation:zero_abundance']='f';
*/
parent::save();
}
/**
* Setup the default values to use when loading this controller to edit a new page.
*/
protected function getDefaults()
{
$r = parent::getDefaults();
if ($this->uri->method(false) == 'create') {
// List id is passed as first argument in URL when creating
$r['termlists_term:termlist_id'] = $this->uri->argument(1);
// Parent id might be passed in $_POST if creating as child of another term.
if (array_key_exists('termlists_term:parent_id', $_POST)) {
$r['termlists_term:parent_id'] = $_POST['termlists_term:parent_id'];
}
}
return $r;
}
/**
* Constructor
*/
public function __construct()
{
parent::__construct('taxon_rank');
$this->columns = array('id' => '', 'rank' => '', 'sort_order' => '');
$this->pagetitle = "Taxon ranks";
}
/**
* Override the edit method, since we are passed a trigger id, whereas we need to edit the
* associated action id.
*/
public function edit($id)
{
$filter = array('param1' => "" . $_SESSION['auth_user']->id . "", 'trigger_id' => $id, 'deleted' => 'f');
$ta = $this->db->select('id')->from('trigger_actions')->where($filter)->limit(1)->get()->result_array();
parent::edit($ta[0]->id);
}
