/**
* Add a file to an existing study
* @param DataverseStudy $study
* @param SuppFile $suppFile
* @return DataverseFile
*/
function &addFileToStudy(&$study, &$suppFile)
{
$packager = new DataversePackager();
$packager->addFile($suppFile);
$packager->createPackage();
// Deposit the package
$journal =& Request::getJournal();
$client = $this->_initSwordClient();
$depositReceipt = $client->deposit($study->getEditMediaUri(), $this->getSetting($journal->getId(), 'username'), $this->getSetting($journal->getId(), 'password'), '', $packager->getPackageFilePath(), $packager->getPackaging(), $packager->getContentType(), false);
// in progress? false
if ($depositReceipt->sac_status != DATAVERSE_PLUGIN_HTTP_STATUS_CREATED) {
return false;
}
// Get the study statement & update the Dataverse file with content source URI
$studyStatement = $client->retrieveAtomStatement($study->getStatementUri(), $this->getSetting($journal->getId(), 'username'), $this->getSetting($journal->getId(), 'password'), '');
// Need the study statement to update Dataverse files
if (!isset($studyStatement)) {
return false;
}
// Create a new Dataverse file for inserted suppfile
$this->import('classes.DataverseFile');
$dvFile = new DataverseFile();
$dvFile->setSuppFileId($suppFile->getId());
$dvFile->setStudyId($study->getId());
$dvFile->setSubmissionId($study->getSubmissionId());
foreach ($studyStatement->sac_entries as $entry) {
$dvUriFileName = substr($entry->sac_content_source, strrpos($entry->sac_content_source, '/') + 1);
if ($dvUriFileName == str_replace(' ', '_', $suppFile->getOriginalFileName())) {
$dvFile->setContentSourceUri($entry->sac_content_source);
break;
}
}
if (!$dvFile->getContentSourceUri()) {
return false;
}
$dvFileDao =& DAORegistry::getDAO('DataverseFileDAO');
$dvFileDao->insertDataverseFile($dvFile);
// Finally, file may have metadata that needs to be in study cataloguing information
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$article =& $articleDao->getArticle($study->getSubmissionId(), $journal->getId(), true);
$this->updateStudy($article, $study);
return $dvFile;
}
/**
* Deposit suppfiles in Dataverse study.
* @param $study DataverseStudy Study associated with author submission
* @param $suppFiles array Array of suppfiles
* @return boolean Files deposited
*/
function depositFiles($study, $suppFiles)
{
$packager = new DataversePackager();
foreach ($suppFiles as $suppFile) {
$suppFile->setFileStage(ARTICLE_FILE_SUPP);
// workaround for #8444
$packager->addFile($suppFile->getFilePath(), $suppFile->getOriginalFileName());
}
$packager->createPackage();
// Deposit the package
$journal =& Request::getJournal();
$client = $this->_initSwordClient();
$depositReceipt = $client->deposit($study->getEditMediaUri(), $this->getSetting($journal->getId(), 'username'), $this->getSetting($journal->getId(), 'password'), '', $packager->getPackageFilePath(), $packager->getPackaging(), $packager->getContentType(), false);
// in progress? false
$deposited = $depositReceipt->sac_status == DATAVERSE_PLUGIN_HTTP_STATUS_CREATED;
if ($deposited) {
// Get the study statement & update the local file list
try {
$studyStatement = $client->retrieveAtomStatement($study->getStatementUri(), $this->getSetting($journal->getId(), 'username'), $this->getSetting($journal->getId(), 'password'), '');
if ($studyStatement) {
// Associate Dataverse-side file with OJS-side file
$dvFileIndex = array();
foreach ($studyStatement->sac_entries as $entry) {
if (strrpos($entry->sac_content_source, '/')) {
$dvUriFileName = substr($entry->sac_content_source, strrpos($entry->sac_content_source, '/') + 1);
$dvFileIndex[$dvUriFileName] = $entry->sac_content_source;
}
}
// Create or update DataverseFile linking suppfile with deposited file
$this->import('classes.DataverseFile');
$dvFileDao =& DAORegistry::getDAO('DataverseFileDAO');
foreach ($suppFiles as $suppFile) {
$suppFileKey = str_replace(' ', '_', $suppFile->getOriginalFileName());
if (array_key_exists($suppFileKey, $dvFileIndex)) {
$dvFile =& $dvFileDao->getDataverseFileBySuppFileId($suppFile->getId());
if (!$dvFile) {
$dvFile = new DataverseFile();
$dvFile->setSuppFileId($suppFile->getId());
$dvFile->setSubmissionId($study->getSubmissionId());
$dvFile->setStudyId($study->getId());
$dvFile->setContentSourceUri($dvFileIndex[$suppFileKey]);
$dvFileDao->insertDataverseFile($dvFile);
} else {
$dvFile->setStudyId($study->getId());
$dvFile->setContentSourceUri($dvFileIndex[$suppFileKey]);
$dvFileDao->updateDataverseFile($dvFile);
}
}
}
}
} catch (Exception $e) {
$application =& PKPApplication::getApplication();
error_log($application->getName() . ': ' . $e->getMessage() . ': ' . $e->getFile() . ': ' . $e->getLine());
}
}
return $deposited;
}
/**
* Internal function to return DataverseFile object from a row.
* @param $row array
* @return DataverseFile
*/
function &_returnDataverseFileFromRow(&$row)
{
$dataversePlugin =& PluginRegistry::getPlugin('generic', $this->_parentPluginName);
$dataversePlugin->import('classes.DataverseFile');
$dvFile = new DataverseFile();
$dvFile->setId($row['dvfile_id']);
$dvFile->setSuppFileId($row['supp_id']);
$dvFile->setStudyId($row['study_id']);
$dvFile->setSubmissionId($row['submission_id']);
$dvFile->setContentSourceUri($row['content_source_uri']);
return $dvFile;
}
