function main()
{
$callback = '';
if (isset($_GET['callback'])) {
$callback = $_GET['callback'];
}
if (isset($_GET['rid'])) {
$rid = $_GET['rid'];
}
$accessions = array();
$xml_filename = 'tmp/' . $rid . '.xml';
$xml = file_get_contents($xml_filename);
$dom = new DOMDocument();
$dom->loadXML($xml);
$xpath = new DOMXPath($dom);
$xpath_query = "//Hit_accession";
$nodeCollection = $xpath->query($xpath_query);
foreach ($nodeCollection as $node) {
$accessions[] = $node->firstChild->nodeValue;
}
$ids = array_slice($accessions, 0, NumSequences);
$hits = fetch_sequences($ids);
if ($callback != '') {
echo $callback . '(';
}
echo json_format(json_encode($hits));
if ($callback != '') {
echo ')';
}
}
function setConfigData($cfg)
{
$tmplFile = '<? $GLOBALS[$cfgCategory] = json_decode(\''.json_format(json_encode($cfg)).'\', true); ?>';
$cfgFileName = 'conf/default.php';
@chmod('conf', 0777);
if(file_exists($cfgFileName)) unlink($cfgFileName);
WriteToFile($cfgFileName, $tmplFile);
}
public function export($var)
{
$var = $this->_formatVarAsJSON($var);
$string = json_encode($var);
foreach ($this->_jsonParams as $index => $value) {
$string = str_replace("\"" . $this->_param($index) . "\"", $value, $string);
}
return json_unicode_to_utf8(json_format($string));
}
function writeFile($filename, $dir, $tweetData)
{
if (!file_exists($dir)) {
mkdir($dir, 0777, true);
}
$filepath = "{$dir}/{$filename}";
$filtered_tweets = array_map(function ($tweet) {
$user = $tweet->{'user'};
return (object) array('userId' => $user->{'id'}, 'user' => $user->{'name'}, 'location' => $user->{'location'}, 'text' => $tweet->{'text'}, 'date' => $tweet->{'created_at'}, 'retweetCount' => $tweet->{'retweet_count'}, 'favoriteCount' => $tweet->{'favorite_count'});
}, json_decode($tweetData));
$fh = fopen($filepath, 'w');
fwrite($fh, json_format($filtered_tweets));
fclose($fh);
}
function api_output($obj, $callback)
{
$status = 404;
// $obj may be array (e.g., for citeproc)
if (is_array($obj)) {
if (isset($obj['status'])) {
$status = $obj['status'];
}
}
// $obj may be object
if (is_object($obj)) {
if (isset($obj->status)) {
$status = $obj->status;
}
}
switch ($status) {
case 303:
header('HTTP/1.1 404 See Other');
break;
case 404:
header('HTTP/1.1 404 Not Found');
break;
case 410:
header('HTTP/1.1 410 Gone');
break;
case 500:
header('HTTP/1.1 500 Internal Server Error');
break;
default:
break;
}
header("Content-type: text/plain");
header("Cache-control: max-age=3600");
if ($callback != '') {
echo $callback . '(';
}
//echo json_encode($obj, JSON_PRETTY_PRINT);
echo json_format(json_encode($obj));
if ($callback != '') {
echo ')';
}
}
function find_clusters($text, $format = 'json')
{
$obj = new stdclass();
$obj->text = $text;
$strings = explode("\n", trim($text));
$obj->result = cluster($strings);
switch ($format) {
case 'json':
echo json_format(json_encode($obj));
break;
case 'html':
default:
echo '<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8" />
<style type="text/css" title="text/css">
body {
font-family: sans-serif;
margin:20px;
}
</style>
<a href="clusterstrings.php">Home</a>
<title>Cluster strings</title>
</head>
<body>
<h1>Cluster strings results</h1>';
echo '<pre>';
echo $obj->result->graph;
echo '</pre>';
//echo str_replace("\n", '', $obj->result->graph);
$s = urlencode(str_replace("\n", '', $obj->result->graph));
echo '<img src="http://chart.googleapis.com/chart?cht=gv&chl=' . $s . '" />';
echo '<pre>';
print_r($obj->result->clusters);
echo '</pre>';
echo '</body>
</html>';
break;
}
}
function dv_config_current()
{
global $com_name, $conf;
$base = $conf['dir_base'];
$db_id = Request::getString('db', false);
require_once JPATH_COMPONENT_SITE . DS . 'dv_config.php';
$dv_conf_file = $base . DS . $db_id . DS . 'applications/dataviewer/config.json';
$db_dv_conf = array();
if (file_exists($dv_conf_file)) {
$db_dv_conf = json_decode(file_get_contents($dv_conf_file), true);
if (!is_array($db_dv_conf)) {
$db_dv_conf = array();
}
if (isset($db_dv_conf['settings'])) {
$db_dv_conf['settings'] = array_merge($dv_conf['settings'], $db_dv_conf['settings']);
}
}
$dv_conf = array_merge($dv_conf, $db_dv_conf);
print json_format(json_encode($dv_conf));
exit;
}
function find_specimens($text, $format = 'json')
{
$obj = new stdclass();
$obj->text = $text;
$obj->codes = extract_specimen_codes($text);
switch ($format) {
case 'json':
$obj->text = html_entity_decode($obj->text, ENT_QUOTES, 'UTF-8');
echo json_format(json_encode($obj));
break;
case 'html':
default:
echo '<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8" />
<style type="text/css" title="text/css">
body {
font-family: sans-serif;
margin:20px;
}
</style>
<a href="specimenparser.php">Home</a>
<title>Specimen parser</title>
</head>
<body>
<h1>Specimen parser results</h1>
<h2>Specimen codes</h2>
<ul>';
foreach ($obj->codes as $code) {
echo '<li>' . $code . '</li>';
}
echo '</ul>
<h2>Input</h2>
<p>' . htmlentities($obj->text, ENT_QUOTES, 'UTF-8') . '</p>
</body>
</html>';
break;
}
}
/**
* filename, brief description, date of creation, by whom
* @copyright (C) 2005-2010 University of Sydney Digital Innovation Unit.
* @link: http://HeuristNetwork.org
* @license http://www.gnu.org/licenses/gpl-3.0.txt
* @package Heurist academic knowledge management system
* @todo
**/
header("Cache-Control: no-cache, must-revalidate");
// HTTP/1.1
header("Expires: Mon, 26 Jul 1997 05:00:00 GMT");
// Date in the past
session_cache_limiter('no-cache');
define('SAVE_URI', 'disabled');
define('SEARCH_VERSION', 1);
require_once dirname(__FILE__) . "/../../common/connect/applyCredentials.php";
require_once dirname(__FILE__) . "/../../common/php/dbMySqlWrappers.php";
require_once dirname(__FILE__) . "/../../records/disambig/findFuzzyRecordMatches.php";
$data = json_decode(@$_POST["data"] ? $_POST["data"] : base64_decode(@$_GET["data"]), true);
$details = @$data["details"];
$types = @$data["types"];
$id = @$data["id"] ? $data["id"] : null;
$fuzziness = @$data["fuzziness"] ? $data["fuzziness"] : null;
if (!$details || !$types) {
print json_format(array("error" => "invalid arguments"));
return;
}
mysql_connection_select(DATABASE);
$matches = findFuzzyMatches($details, $types, $id, $fuzziness);
print json_format(array("matches" => $matches));
function toPrettyString()
{
return json_format($this->toString());
}
/**
* save loaded data to plugin composer file
*
* @return void
*/
public function write()
{
$json = json_encode($this->data);
if (function_exists('json_format')) {
$json = json_format($json);
} else {
$json = \Composer\Json\JsonFormatter::format($json, true, true);
}
file_put_contents($this->path, $json);
}
/**
* @brief Handle OpenURL request
*
* We may have more than one parameter with same name, so need to access QUERY_STRING, not _GET
* http://stackoverflow.com/questions/353379/how-to-get-multiple-parameters-with-same-name-from-a-url-in-php
*
*/
function main()
{
global $config;
global $debug;
global $format;
$id = 0;
$callback = '';
// If no query parameters
if (count($_GET) == 0) {
display_form();
exit(0);
}
if (isset($_GET['format'])) {
switch ($_GET['format']) {
case 'html':
$format = 'html';
break;
case 'json':
$format = 'json';
break;
default:
$format = 'html';
break;
}
}
if (isset($_GET['callback'])) {
$callback = $_GET['callback'];
}
$debug = false;
if (isset($_GET['debug'])) {
$debug = true;
}
// Handle query and display results.
$query = explode('&', html_entity_decode($_SERVER['QUERY_STRING']));
$params = array();
foreach ($query as $param) {
list($key, $value) = explode('=', $param);
$key = preg_replace('/^\\?/', '', urldecode($key));
$params[$key][] = trim(urldecode($value));
}
if ($debug) {
echo '<h1>Params</h1>';
echo '<pre>';
print_r($params);
echo '</pre>';
}
// This is what we got from user
$referent = new stdclass();
parse_openurl($params, $referent);
// Flesh it out
// If we are looking for an article we need an ISSN, or at least an OCLC
// Ask whether have this in our database (assumes we have ISSN)
if (!isset($referent->issn)) {
// Try and get ISSN from bioGUID
$issn = issn_from_title($referent->secondary_title);
if ($issn != '') {
$referent->issn = $issn;
} else {
// No luck with ISSN, look for OCLC
if (!isset($referent->oclc)) {
$oclc = oclc_for_title($referent->secondary_title);
if ($oclc != 0) {
$referent->oclc = $oclc;
}
}
}
}
if ($debug) {
echo '<h1>Referent</h1>';
echo '<pre>';
print_r($referent);
echo '</pre>';
}
// Handle identifiers
if (isset($referent->url)) {
// BHL URL, for example if we have already mapped article to BHL
// in Zotero,
if (preg_match('/^http:\\/\\/(www\\.)?biodiversitylibrary.org\\/page\\/(?<pageid>[0-9]+)/', $referent->url, $matches)) {
//print_r($matches);
$PageID = $matches['pageid'];
$references = bhl_reference_from_pageid($PageID);
//print_r($references);
if (count($references) == 0) {
// We don't have an article for this PageID
$search_hit = bhl_score_page($PageID, $referent->title);
// Store
$id = db_store_article($referent, $PageID);
} else {
// Have a reference with this PageID already
// Will need to handle case where > 1 article on same page, e.g.
// http://www.biodiversitylibrary.org/page/3336598
$id = $references[0];
}
// Did we get a hit?
if ($id != 0) {
// We have this reference in our database
switch ($format) {
case 'json':
// Display object
$reference = db_retrieve_reference($id);
header("Content-type: text/plain; charset=utf-8\n\n");
if ($callback != '') {
echo $callback . '(';
}
echo json_format(json_encode($reference));
if ($callback != '') {
echo ')';
}
break;
case 'html':
default:
// Redirect to reference display
header('Location: ' . $config['web_root'] . 'reference/' . $id . "\n\n");
break;
}
exit;
}
}
}
// OK, we're not forcing a match to BHL, so do we have this article?
$id = db_find_article($referent);
//echo "<b>id=$id</b><br/>";
if ($id != 0) {
// We have this reference in our database
switch ($format) {
case 'json':
// Display object
$reference = db_retrieve_reference($id);
header("Content-type: text/plain; charset=utf-8\n\n");
if ($callback != '') {
echo $callback . '(';
}
echo json_format(json_encode($reference));
if ($callback != '') {
echo ')';
}
break;
case 'html':
default:
// Twitter as log
if ($config['twitter']) {
$tweet_this = false;
$tweet_this = isset($_GET['rfr_id']);
if ($tweet_this) {
$url = $config['web_root'] . 'reference/' . $id . ' ';
// . '#openurl'; // url + hashtag
$url = $id;
$url_len = strlen($url);
$status = '';
//$text = $_GET['rfr_id'];
$text = '#openurl ' . $_SERVER["HTTP_REFERER"];
//$text .= ' @rdmpage';
if (isset($article->title)) {
}
$status = $text;
$status_len = strlen($status);
$extra = 140 - $status_len - $url_len - 1;
if ($extra < 0) {
$status_len += $extra;
$status_len -= 1;
$status = substr($status, 0, $status_len);
$status .= '…';
}
$status .= ' ' . $url;
tweet($status);
}
}
// Redirect to reference display
header('Location: reference/' . $id . "\n\n");
break;
}
exit;
}
// OK, not found, so let's go look for it...
// Search BHL
$atitle = '';
if (isset($referent->title)) {
$atitle = $referent->title;
}
$search_hits = bhl_find_article($atitle, $referent->secondary_title, $referent->volume, isset($referent->spage) ? $referent->spage : $referent->pages, isset($referent->series) ? $referent->series : '', isset($referent->date) ? $referent->date : '', isset($referent->issn) ? $referent->issn : '');
if (count($search_hits) == 0) {
// try alternative way of searching using article title
$search_hits = bhl_find_article_from_article_title($referent->title, $referent->secondary_title, $referent->volume, isset($referent->spage) ? $referent->spage : $referent->pages, isset($referent->series) ? $referent->series : '', isset($referent->issn) ? $referent->issn : '');
}
// At this point if we haven't found it in BHL we could go elsewhere, e.g. bioGUID,
// in which case we'd need to take this into account when displaying HTML and JSON
if ($debug) {
echo '<h3>Search hits</h3>';
echo '<pre>';
print_r($search_hits);
echo '</pre>';
}
if (1) {
// Check whether we already have an article that starts on this
foreach ($search_hits as $hit) {
$references = bhl_reference_from_pageid($hit->PageID);
//print_r($references);
if (count($references) != 0) {
// We have this reference in our database
switch ($format) {
case 'json':
// Display object
$reference = db_retrieve_reference($references[0]);
header("Content-type: text/plain; charset=utf-8\n\n");
if ($callback != '') {
echo $callback . '(';
}
echo json_format(json_encode($reference));
if ($callback != '') {
echo ')';
}
break;
case 'html':
default:
// Redirect to reference display
header('Location: reference/' . $references[0] . "\n\n");
break;
}
exit;
}
}
}
// Output search results in various formats...
switch ($format) {
case 'json':
display_bhl_result_json($referent, $search_hits, $callback);
break;
case 'html':
default:
display_bhl_result_html($referent, $search_hits);
break;
}
}
header("Location: ".HEURIST_BASE_URL."/#data=" . $val);
return "";
}
ob_start("outputAsRedirect");
if ($_POST["heurist-sessionid"] != $_COOKIE["heurist-sessionid"]) { // saw TODO: check that this is ok or should this be the database session?
// saveFile is only available through dispatcher.php, or if heurist-sessionid is known (presumably only our scripts will know this)
getError("unauthorised HAPI user");
}
}
*/
if (@$_REQUEST['url']) {
$sURL = $_REQUEST['url'];
//url to be thumbnailed
$res = generate_thumbnail($sURL, true);
print json_format($res);
exit;
}
//
// main function
//
function generate_thumbnail($sURL, $needConnect)
{
if (!is_logged_in()) {
return getError("no logged-in user");
}
$res = array();
//get picture from service
//"http://www.sitepoint.com/forums/image.php?u=106816&dateline=1312480118";
$remote_path = str_replace("[URL]", $sURL, WEBSITE_THUMBNAIL_SERVICE);
$heurist_path = tempnam(HEURIST_UPLOAD_DIR, "_temp_");
/**
* GET wrapper for oAuthRequest.
*/
function get($url, $parameters = array())
{
$response = $this->oAuthRequest($url, 'GET', $parameters);
if ($this->format === 'json' && $this->decode_json) {
return json_decode($response);
}
return json_format($response);
}
function jlog($json)
{
if (!is_string($json)) {
$json = json_encode($json);
}
echo json_format($json) . "\n";
}
}
if (!@$_REQUEST['q'] || @$_REQUEST['ver'] && intval(@$_REQUEST['ver']) < SEARCH_VERSION) {
construct_legacy_search();
}
// migration path
if (!@$_REQUEST['q'] && !@$_REQUEST['s']) {
return;
}
// wwgd
if ($_REQUEST['w'] == 'B' || $_REQUEST['w'] == 'bookmark') {
$search_type = BOOKMARK;
} else {
$search_type = BOTH;
}
// all records
mysql_connection_select(DATABASE);
if (preg_match('/\\b_BROKEN_\\b/', $_REQUEST['q'])) {
$broken = 1;
$_REQUEST['q'] = preg_replace('/\\b_BROKEN_\\b/', '', $_REQUEST['q']);
}
$query = REQUEST_to_query("select rec_ID, bkm_ID ", $search_type);
if (@$broken) {
$query = str_replace(' where ', ' where (to_days(now()) - to_days(rec_URLLastVerified) >= 8) and ', $query);
}
$res = mysql_query($query);
$ids = array();
while ($row = mysql_fetch_assoc($res)) {
array_push($ids, array("recID" => $row["rec_ID"], "bkmk_id" => $row["bkm_ID"]));
}
print json_format($ids);
/**
* @brief Handle microcitation request
*
*/
function main()
{
global $config;
global $debug;
// If no query parameters
if (count($_GET) == 0) {
//display_form();
exit(0);
}
$callback = '';
if (isset($_GET['callback'])) {
$callback = $_GET['callback'];
}
$format = 'json';
$debug = false;
if (isset($_GET['debug'])) {
$debug = true;
}
$q = $_GET['q'];
$result->pages = matching_pages($q);
if (count($result->pages) == 0) {
if ($format == 'json') {
header('HTTP/1.1 404 Not Found');
header('Status: 404 Not Found');
$_SERVER['REDIRECT_STATUS'] = 404;
echo 'Not found';
exit;
}
} else {
// Do we have any references for the pages?
$result->references = reference_from_page($result->pages);
}
// Candidate pages
if ($format == 'json') {
header("Content-type: text/plain; charset=utf-8\n\n");
if ($callback != '') {
echo $callback . '(';
}
echo json_format(json_encode($result));
if ($callback != '') {
echo ')';
}
}
}
if (array_key_exists($varNames[0], $_POST)) {
$updates[$colName] = $_POST[$varNames[0]];
}
}
mysql__update("usrBookmarks", "bkm_ID={$bkm_ID} and bkm_UGrpID={$usrID}", $updates);
$res = mysql_query("select " . join(", ", array_keys($updates)) . " from usrBookmarks where bkm_ID={$bkm_ID} and bkm_UGrpID={$usrID}");
if (mysql_num_rows($res) == 1) {
$dbVals = mysql_fetch_assoc($res);
$hVals = array();
foreach ($dbVals as $colName => $val) {
$hVals[$updatable[$colName][1]] = $val;
}
if ($tagString !== NULL) {
$hVals["tagString"] = $tagString;
}
print "(" . json_format($hVals) . ")";
} else {
if ($tagString !== NULL) {
print "({tagString: \"" . slash($tagString) . "\"})";
}
}
}
function doTagInsertion($bkm_ID)
{
global $usrID;
//translate bmkID to record IT
$res = mysql_query("select bkm_recID from usrBookmarks where bkm_ID={$bkm_ID}");
$rec_id = mysql_fetch_row($res);
$rec_id = $rec_id[0] ? $rec_id[0] : null;
if (!$rec_id) {
return "";
* @version 3.1.0
* @license http://www.gnu.org/licenses/gpl-3.0.txt GNU License 3.0
* @package Heurist academic knowledge management system
* @subpackage !!!subpackagename for file such as Administration, Search, Edit, Application, Library
*/
/**
* filename, brief description, date of creation, by whom
* @copyright (C) 2005-2010 University of Sydney Digital Innovation Unit.
* @link: http://HeuristNetwork.org
* @license http://www.gnu.org/licenses/gpl-3.0.txt
* @package Heurist academic knowledge management system
* @todo
**/
header("Cache-Control: no-cache, must-revalidate");
// HTTP/1.1
header("Expires: Mon, 26 Jul 1997 05:00:00 GMT");
// Date in the past
session_cache_limiter('no-cache');
define('SAVE_URI', 'disabled');
define('SEARCH_VERSION', 1);
require_once dirname(__FILE__) . "/../../search/getSearchResults.php";
$args = json_decode(@$_POST["data"] ? $_POST["data"] : base64_decode(@$_GET["data"]), true);
$result = loadSearch($args);
if (array_key_exists("records", $result)) {
// turn the associative array into the non-associative one HAPI expects
foreach ($result["records"] as $i => $record) {
$result["records"][$i] = array(@$record["rec_ID"], null, @$record["rec_RecTypeID"], @$record["rec_Title"], @$record["details"], @$record["rec_URL"], @$record["rec_ScratchPad"], @$record["rec_OwnerUGrpID"], @$record["rec_NonOwnerVisibility"], @$record["rec_URLLastVerified"], @$record["rec_URLErrorMessage"], @$record["rec_Added"], @$record["rec_Modified"], @$record["rec_AddedByUGrpID"], @$record["rec_Hash"], @$record["bkm_ID"], null, @$record["bkm_Rating"], null, null, @$record["tags"], @$record["wgTags"], @$record["notifies"], @$record["comments"]);
}
}
print json_format($result);
<?php
require "pretty_print_json.php";
$model = $_REQUEST["sg"];
//pre processing the json before writing to file
//$modelTask["task"] = $task;
/*if(version_compare(PHP_VERSION, '5.4.0', '>=')){
$model = json_encode($completeModel, JSON_PRETTY_PRINT);
} else {
$model = json_encode($completeModel, 128);
}*/
try {
$modelArray = json_decode($model, true);
$completeModel = "{\"task\": {$model}}";
$model = json_format($completeModel);
// convert messy JSON to pretty JSON
} catch (Exception $e) {
echo "{ \"error\":\"" . ($e->e = getMessage() . "\"}");
// we need to log the error to the server log file
}
try {
$name = $modelArray["taskName"];
$name = str_replace(" ", "-", $name);
$name = "problems/" . $name . ".json";
//checking if the file name already exists
if (file_exists($name)) {
throw new Exception("File with same name already exist");
}
//writing to file
$file = fopen($name, "w");
fwrite($file, stripslashes($model));
function format_as_json($output_dir, $corpus, $path_to_corpus, $file_path = FALSE)
{
global $test_meta_file;
//The tests to perform in json format
global $country_map;
//Maps lanaguages to countries
global $metadata;
//Holds the data that will be saved to json. Declared as global so we can use it in the get_score function
global $test_meta;
//This is the data about the tests held in an accessible array. Declared as global so we can use it in the get_score function
$output_file = $output_dir . $corpus . '_transparency.json';
//echo $output_file;
//Get the existing data on this provider from a file
//If file doesn't exist create the start of one
if (!file_exists($output_file)) {
$metadata_header = array("provider" => $corpus, "hierarchy" => 0, "activityCount" => 100);
$json = json_encode($metadata_header);
file_put_contents($output_file, $json);
//die;
}
$json = file_get_contents($output_file);
$metadata = json_decode($json, true);
//print_r($metadata); //die;
//Get the test metadata so we know what threasholds and scores to apply to this test
$test_meta = file_get_contents($test_meta_file);
$test_meta = json_decode($test_meta, true);
//print_r($test_meta); die;
//test the providers files and return the data for us
if ($file_path) {
$data = count_attributes($path_to_corpus, basename($file_path));
//echo "yes";
} else {
$data = count_attributes($path_to_corpus);
}
//print_r($data) ; die;
//Set the hierarcy that we're going to test one. the rule is the lowest i.e. highest number which should be the last value of $data["hierarchies"]
$metadata["hierarchy"] = end($data["hierarchies"]);
reset($data["hierarchies"]);
//end moves the array pointer to the end of the array, so lets rest it
// Number of activities
$metadata["activityCount"] = $data["no-activities"][$metadata["hierarchy"]];
//number of activities tested at our hierarchy level
//echo $metadata["activityCount"]; die;
//get the results for the json file
//sTet up some variables for activiy-date element first
//$attribute_values = array("start-planned","start-actual","end-planned","end-actual");
$attribute_values = array("start", "end");
//$attribute_start_values = array("start-planned","start-actual");
//$attribute_end_values = array("end-planned","end-actual");
$start = $end = 0;
//print_r($data["participating_org_implementing"]); die;
foreach ($data["hierarchies"] as $hierarchy) {
//The count attributes routine fetches data at all hierarchies, but we only need to test the lowest usually.
if ($hierarchy == $metadata["hierarchy"]) {
//Set for each provider in a metadata file
//Elements
$document_links = $result_element = $conditions = 0;
if (isset($data["document_links"][$hierarchy])) {
$document_links = count($data["document_links"][$hierarchy]);
}
if (isset($data["result_element"][$hierarchy])) {
$result_element = count($data["result_element"][$hierarchy]);
}
if (isset($data["conditions"][$hierarchy])) {
$conditions = count($data["conditions"][$hierarchy]);
}
//Participating org test
$participating_org_accountable = $participating_org_implementing = 0;
if (isset($data["participating_org_accountable"][$hierarchy])) {
$participating_org_accountable = array_unique($data["participating_org_accountable"][$hierarchy]);
$participating_org_accountable = count($participating_org_accountable);
}
if (isset($data["participating_org_implementing"][$hierarchy])) {
$participating_org_implementing = array_unique($data["participating_org_implementing"][$hierarchy]);
$participating_org_implementing = count($participating_org_implementing);
}
//echo $participating_org_implementing; die;
//Budget/Planned Disbursement
$budget = 0;
if (isset($data["budget"][$hierarchy])) {
$budget = count($data["budget"][$hierarchy]);
}
//Identifiers
$unique_ids = array_unique($data["identifiers"][$hierarchy]["good"]);
//In case identifiers are used more than once
$good_ids = count($unique_ids);
//Transactions
$transaction_type_commitment = $transaction_type_disbursements = $transaction_type_expenditure = 0;
$unique_commitments = $unique_disbursements = $unique_expenditure = array();
if (isset($data["transaction_type_commitment"][$hierarchy])) {
$unique_commitments = array_unique($data["transaction_type_commitment"][$hierarchy]);
//In case one activity has more than one commitment
$transaction_type_commitment = count($unique_commitments);
}
if (isset($data["transaction_type_disbursement"][$hierarchy])) {
$unique_disbursements = array_unique($data["transaction_type_disbursement"][$hierarchy]);
//In case one activity has more than one commitment
$transaction_type_disbursements = count($unique_disbursements);
//echo $transaction_type_disbursements; //die;
}
if (isset($data["transaction_type_expenditure"][$hierarchy])) {
$unique_expenditure = array_unique($data["transaction_type_expenditure"][$hierarchy]);
//In case one activity has more than one commitment
$transaction_type_expenditure = count($unique_expenditure);
}
//echo $transaction_type_expenditure; die;
//Test to see if an activity has either
//Both a disbursement and an expenditure
/* This would mean looping through one array and seeing if iati-identifier values are in both. And getting a count
* Or if one array is smaller than the treashold then it's a fail??
* Or an array diff would give us numbers of activites that don't have both (but not the numbers without any!!
//OR
//Either a disbursement or an expenditure
* We could merge the arrays, and then array unique it to get our count
*/
$disbursements_expenditure = array_merge($unique_disbursements, $unique_expenditure);
$unique_disbursements_expenditure = array_unique($disbursements_expenditure);
$disbursements_expenditure_count = count($unique_disbursements_expenditure);
//Tracable Transactions
$no_disbursements = $data["no_disbursements"][$hierarchy];
//echo $no_disbursements . PHP_EOL;
$no_incoming_funds = $data["no_incoming_funds"][$hierarchy];
//echo $no_incoming_funds . PHP_EOL;
$transactions_that_should_be_traced = $no_disbursements + $no_incoming_funds;
//echo $transactions_that_should_be_traced . PHP_EOL;
$no_tracable_transactions = $data["no_tracable_transactions"][$hierarchy];
//echo $no_tracable_transactions . PHP_EOL;
// die;
if ($no_tracable_transactions > 0) {
//avoid divide by zero
$percent_tracable = 100 * round($no_tracable_transactions / $transactions_that_should_be_traced, 2);
$tracable_threashold = $test_meta["test"]["Financial transaction recipient / Provider activity Id"]["threashold"];
//echo $test_meta["test"]["Financial transaction recipient / Provider activity Id"]["threashold"];
if ($percent_tracable >= $tracable_threashold) {
//echo "yes"; die;
$tracable_score = $test_meta["test"]["Financial transaction recipient / Provider activity Id"]["score"];
} else {
$tracable_score = 0;
}
} else {
$tracable_score = $percent_tracable = 0;
}
//Location
//$activities_with_location = $activities_with_coordinates = $activities_with_adminstrative = 0;
//Count activities with structured location data
//This is either co-ordinates present or
//administartive element and adm1 or adm2 attribute
//This MUST be a subset of the location count (mustn't it?)
$activities_with_coordinates = $activities_with_adminstrative = array();
//set up empty arrays first
if (isset($data["activities_with_coordinates"][$hierarchy])) {
$activities_with_coordinates = array_unique($data["activities_with_coordinates"][$hierarchy]);
}
if (isset($data["activities_with_adminstrative"][$hierarchy])) {
$activities_with_adminstrative = array_unique($data["activities_with_coordinates"][$hierarchy]);
}
$activities_with_structure_locations = array_merge($activities_with_coordinates, $activities_with_adminstrative);
//if arrays are empty this is ok!
$activities_with_structure_locations = array_unique($activities_with_structure_locations);
//need to unique them as activities can have both
$activities_with_structure_locations_count = count($activities_with_structure_locations);
//echo $activities_with_structure_locations_count . PHP_EOL;
$activities_with_location_count = 0;
$activities_with_location = array();
if (isset($data["activities_with_location"][$hierarchy])) {
$activities_with_location = array_unique($data["activities_with_location"][$hierarchy]);
}
//$activities_with_location = array_merge($activities_with_location,$activities_with_structure_locations);
$activities_with_location = array_unique($activities_with_location);
$activities_with_location_count = count($activities_with_location);
//echo $activities_with_location_count . PHP_EOL;
//
$location_level_1 = $activities_with_location_count;
$location_level_2 = $activities_with_structure_locations_count;
//die;
//Sector
$activities_sector_declared_dac = $activities_sector_assumed_dac = array();
if (isset($data["activities_sector_declared_dac"][$hierarchy])) {
$activities_sector_declared_dac = $data["activities_sector_declared_dac"][$hierarchy];
$activities_sector_declared_dac = array_unique($activities_sector_declared_dac);
}
if (isset($data["activities_sector_assumed_dac"][$hierarchy])) {
$activities_sector_assumed_dac = $data["activities_sector_assumed_dac"][$hierarchy];
$activities_sector_assumed_dac = array_unique($activities_sector_assumed_dac);
}
$activities_with_dac_sector = array_merge($activities_sector_declared_dac, $activities_sector_assumed_dac);
//probably don't need to 'unique' this, but won't hurt
$activities_with_dac_sector = array_unique($activities_with_dac_sector);
$activities_with_dac_sector_count = count($activities_with_dac_sector);
//echo $activities_with_dac_sector_count . PHP_EOL;
// die;
// die;
//Last-updated-datetime
//$most_recent = $data["most_recent"][$hierarchy];
//Activity Dates
foreach ($attribute_values as $value) {
//Loop through all possible results
if (isset($data["activities_with_attribute"][$hierarchy][$value])) {
//echo $value . PHP_EOL;
$count = count(array_unique($data["activities_with_attribute"][$hierarchy][$value]));
//if (in_array($value, $attribute_start_values)) {
if ($value == "start") {
$start = $start + $count;
//} elseif (in_array($value, $attribute_end_values)) {
} else {
if ($value == "end") {
$end = $end + $count;
}
}
}
}
//Languages
$activies_in_country_lang = array();
if (isset($data["activies_in_country_lang"][$hierarchy])) {
$activies_in_country_lang = $data["activies_in_country_lang"][$hierarchy];
$activies_in_country_lang = array_unique($activies_in_country_lang);
}
$activies_in_country_lang_count = count($activies_in_country_lang);
//echo $activies_in_country_lang_count; //die;
}
}
//echo $start . PHP_EOL;
//echo $end . PHP_EOL;
//Work out the scores
$start_score = get_score($start, "Activity Dates (Start Date)");
$end_score = get_score($end, "Activity Dates (End Date)");
$document_links_score = get_score($document_links, "Activity Documents");
$conditions_score = get_score($conditions, "Text of Conditions");
$result_element_score = get_score($result_element, "Results data");
$participating_org_accountable_score = get_score($participating_org_accountable, "Participating Organisation (Accountable)");
$participating_org_implementing_score = get_score($participating_org_implementing, "Participating Organisation (Implementing)");
$budget_score = get_score($budget, "Activity Budget / Planned Disbursement");
$good_ids_score = get_score($good_ids, "IATI activity identifier");
$transaction_type_commitment_score = get_score($transaction_type_commitment, "Financial transaction (Commitment)");
$transaction_type_disb_expend_score = get_score($disbursements_expenditure_count, "Financial transaction (Disbursement & Expenditure)");
$location_level_1_score = get_score($location_level_1, "Sub-national Geographic Location (text)");
$location_level_2_score = get_score($location_level_2, "Sub-national Geographic Location (structure)");
$activities_with_dac_sector_score = get_score($activities_with_dac_sector_count, "Sector (DAC CRS)");
$activies_in_country_lang_score = get_score($activies_in_country_lang_count, "Activity Title or Description (Recipient language)");
$metadata["tests"]["activityDateStart"]["count"] = $start;
$metadata["tests"]["activityDateStart"]["score"] = $start_score["score"];
$metadata["tests"]["activityDateStart"]["percentage"] = $start_score["percentage"];
$metadata["tests"]["activityDateEnd"]["count"] = $end;
$metadata["tests"]["activityDateEnd"]["score"] = $end_score["score"];
$metadata["tests"]["activityDateEnd"]["percentage"] = $end_score["percentage"];
$metadata["tests"]["documentLink"]["count"] = $document_links;
$metadata["tests"]["documentLink"]["score"] = $document_links_score["score"];
$metadata["tests"]["documentLink"]["percentage"] = $document_links_score["percentage"];
$metadata["tests"]["result"]["count"] = $result_element;
$metadata["tests"]["result"]["score"] = $result_element_score["score"];
$metadata["tests"]["result"]["percentage"] = $result_element_score["percentage"];
$metadata["tests"]["conditions"]["count"] = $conditions;
$metadata["tests"]["conditions"]["score"] = $conditions_score["score"];
$metadata["tests"]["conditions"]["percentage"] = $conditions_score["percentage"];
$metadata["tests"]["participatingOrgImplementing"]["count"] = $participating_org_implementing;
$metadata["tests"]["participatingOrgImplementing"]["score"] = $participating_org_implementing_score["score"];
$metadata["tests"]["participatingOrgImplementing"]["percentage"] = $participating_org_implementing_score["percentage"];
$metadata["tests"]["participatingOrgAccountable"]["count"] = $participating_org_accountable;
$metadata["tests"]["participatingOrgAccountable"]["score"] = $participating_org_accountable_score["score"];
$metadata["tests"]["participatingOrgAccountable"]["percentage"] = $participating_org_accountable_score["percentage"];
$metadata["tests"]["budget"]["count"] = $budget;
$metadata["tests"]["budget"]["score"] = $budget_score["score"];
$metadata["tests"]["budget"]["percentage"] = $budget_score["percentage"];
$metadata["tests"]["iatiIdentifier"]["count"] = $good_ids;
$metadata["tests"]["iatiIdentifier"]["score"] = $good_ids_score["score"];
$metadata["tests"]["iatiIdentifier"]["percentage"] = $good_ids_score["percentage"];
$metadata["tests"]["transactionTypeCommitment"]["count"] = $transaction_type_commitment;
$metadata["tests"]["transactionTypeCommitment"]["score"] = $transaction_type_commitment_score["score"];
$metadata["tests"]["transactionTypeCommitment"]["percentage"] = $transaction_type_commitment_score["percentage"];
$metadata["tests"]["transactionTypeDisbursementExpenditure"]["count"] = $disbursements_expenditure_count;
$metadata["tests"]["transactionTypeDisbursementExpenditure"]["score"] = $transaction_type_disb_expend_score["score"];
$metadata["tests"]["transactionTypeDisbursementExpenditure"]["percentage"] = $transaction_type_disb_expend_score["percentage"];
$metadata["tests"]["transactionTracability"]["eligable"] = $transactions_that_should_be_traced;
$metadata["tests"]["transactionTracability"]["count"] = $no_tracable_transactions;
$metadata["tests"]["transactionTracability"]["score"] = $tracable_score;
$metadata["tests"]["transactionTracability"]["percentage"] = $percent_tracable;
$metadata["tests"]["locationText"]["count"] = $location_level_1;
$metadata["tests"]["locationText"]["score"] = $location_level_1_score["score"];
$metadata["tests"]["locationText"]["percentage"] = $location_level_1_score["percentage"];
$metadata["tests"]["locationStructure"]["count"] = $location_level_2;
$metadata["tests"]["locationStructure"]["score"] = $location_level_2_score["score"];
$metadata["tests"]["locationStructure"]["percentage"] = $location_level_2_score["percentage"];
$metadata["tests"]["sector"]["count"] = $activities_with_dac_sector_count;
$metadata["tests"]["sector"]["score"] = $activities_with_dac_sector_score["score"];
$metadata["tests"]["sector"]["percentage"] = $activities_with_dac_sector_score["percentage"];
$metadata["tests"]["language"]["count"] = $activies_in_country_lang_count;
$metadata["tests"]["language"]["score"] = $activies_in_country_lang_score["score"];
$metadata["tests"]["language"]["percentage"] = $activies_in_country_lang_score["percentage"];
$json = json_encode($metadata);
$json = json_format($json);
//pretty it up . Function from include functions/pretty_json.php
file_put_contents($output_file, $json);
//die;
}
function error_exit($msg)
{
header('Content-type: text/javascript; charset=utf-8');
print json_format(array('error' => $msg));
exit;
}
$callback = '';
$journal = '';
$volume = '';
$page = '';
$year = '';
if (isset($_GET['callback'])) {
$callback = $_GET['callback'];
}
if (isset($_GET['journal'])) {
$journal = $_GET['journal'];
}
if (isset($_GET['volume'])) {
$volume = $_GET['volume'];
}
if (isset($_GET['page'])) {
$page = $_GET['page'];
}
if (isset($_GET['year'])) {
$year = $_GET['year'];
}
$search = new stdclass();
$search->results = find_reference($journal, $volume, $page, $year);
$search->count = count($search->results);
header("Content-type: text/plain; charset=utf-8\n\n");
if ($callback != '') {
echo $callback . '(';
}
echo json_format(json_encode($search));
if ($callback != '') {
echo ')';
}
* Use the resulting JSON export file in other languages
* other than PHP. Always check for 'version' key because
* new major versions can modify the structure of the JSON file.
*
* The result of running this script is the export.json file.
*
* @license Code and contributions have 'MIT License'
* More details: https://github.com/serbanghita/Mobile-Detect/blob/master/LICENSE.txt
*
*/
// Included nicejson function to beautify the result JSON file.
// This library is not mandatory.
if (file_exists(dirname(__FILE__) . '/nicejson/nicejson.php')) {
include_once dirname(__FILE__) . '/nicejson/nicejson.php';
}
// Include Mobile Detect.
require_once dirname(__FILE__) . '/../Mobile_Detect.php';
$detect = new Mobile_Detect();
$json = array('version' => $detect->getScriptVersion(), 'headerMatch' => $detect->getMobileHeaders(), 'uaHttpHeaders' => $detect->getUaHttpHeaders(), 'uaMatch' => array('phones' => $detect->getPhoneDevices(), 'tablets' => $detect->getTabletDevices(), 'browsers' => $detect->getBrowsers(), 'os' => $detect->getOperatingSystems(), 'utilities' => $detect->getUtilities()));
$jsonString = function_exists('json_format') ? json_format($json) : json_encode($json);
// Write the JSON file to disk.
// You can import this file in your app.
$fileName = dirname(__FILE__) . '/../Mobile_Detect.json';
$handle = fopen($fileName, 'w');
$fwrite = fwrite($handle, $jsonString);
fclose($handle);
if ($fwrite) {
echo 'Done. Check ' . realpath($fileName) . ' file.';
} else {
echo 'Failed to write ' . realpath($fileName) . ' to disk.';
}
while ($row = mysql_fetch_row($res)) {
$userGrp['users'][$row[0]] = $row;
}
}
if (!is_logged_in()) {
$query = mysql_query("SELECT ugr_FirstName, ugr_LastName, ugr_eMail FROM sysUGrps WHERE ugr_ID=2");
$details = mysql_fetch_row($query);
$fullName = $details[0] . " " . $details[1];
$eMail = $details[2];
$userGrp['adminName'] = $fullName;
$userGrp['adminMail'] = $eMail;
}
// using ob_gzhandler makes this stuff up on IE6-
//ini_set("zlib.output_compression_level", 5);
//ob_start('ob_gzhandler');
print "top.HEURIST.userGrp = " . json_format($userGrp) . ";\n";
print "\n";
}
?>
if (typeof top.HEURIST.fireEvent == "function") top.HEURIST.fireEvent(window, "heurist-obj-user-loaded");
<?php
//ob_end_flush();
}
}
}
}
//search the particular user info
} else {
//logged in
?>
top.document.body.className += " is-not-logged-in";
$has_descr = true;
//(@$_REQUEST['has_descr']=="1");
if (!$parent_id) {
return;
}
$success_msg = null;
$failure_msg = null;
$res_array = null;
$res = upload_termsfile($parent_id, $domain, $has_codes, $has_descr);
//$res = array();
if ($res != null) {
if (array_key_exists('error', $res)) {
$failure_msg = $res['error'];
} else {
$success_msg = "List of terms has been imported.";
$res_array = json_format($res);
}
}
?>
<html>
<head>
<title>Import list of terms into current branch</title>
<meta http-equiv="content-type" content="text/html; charset=utf-8">
<link rel="stylesheet" type="text/css" href="<?php
echo HEURIST_BASE_URL;
?>
common/css/global.css">
<link rel="stylesheet" type="text/css" href="<?php
echo HEURIST_BASE_URL;
?>
if (!is_logged_in()) {
jsonError("no logged-in user");
}
if ($_SERVER['REQUEST_METHOD'] == 'POST' && empty($_POST) && empty($_FILES) && $_SERVER['CONTENT_LENGTH'] > 0) {
jsonError("File is too large. " . $_SERVER['CONTENT_LENGTH'] . " bytes exceeds the limit of " . ini_get('post_max_size') . ". Please get system administrator to increase the file size limits or load your large files on a video server or other suitable web service and use the URL to reference the file here");
} else {
$upload = @$_FILES["file"];
if ($upload) {
mysql_connection_overwrite(DATABASE);
mysql_query("start transaction");
//POST Content-Length of 103399974 bytes exceeds the limit of 29360128 bytes in Unknown on line
//$upload["type"]
$fileID = upload_file($upload["name"], null, $upload["tmp_name"], $upload["error"], $upload["size"], $_REQUEST["description"], false);
if (is_numeric($fileID)) {
$file = get_uploaded_file_info($fileID, false);
print json_format($file);
mysql_query("commit");
} else {
if ($fileID) {
jsonError($fileID);
} else {
if ($_FILES["file"]["error"]) {
jsonError("uploaded file was too large");
} else {
jsonError("file upload was interrupted");
}
}
}
} else {
jsonError("File data are not posted to server side");
}
$item = new stdclass();
$item->uri = $config['web_root'] . 'reference/' . $reference_id;
$item->type = $reference->genre;
$item->label = $reference->title;
// Group journals
if (!isset($journal_names[$reference->issn])) {
$journal_names[$reference->issn] = $reference->secondary_title;
}
$item->journal = $journal_names[$reference->issn];
$item->citation = reference_authors_to_text_string($reference) . ' (' . $reference->year . ') ' . reference_to_citation_text_string($reference);
$item->year = $reference->year;
if ($reference->PageID != 0) {
$image = bhl_fetch_page_image($reference->PageID);
$item->imageURL = $image->thumbnail->url;
} else {
// if it's an article we could use journal image
$item->imageURL = 'http://bioguid.info/issn/image.php?issn=' . $reference->issn;
}
$item->coauthors = array();
foreach ($reference->authors as $author) {
if (in_array($author->id, $c)) {
$item->coauthors[] = $author->forename . ' ' . $author->lastname;
}
}
$exhibit->items[] = $item;
}
}
echo json_format(json_encode($exhibit));
?>
foreach ($data as $dt) {
$dt_id = $dt[0];
$dt_mode = $dt[1];
$dt_val = $dt[2];
$query = "update defDetailTypes set ";
if ($dt_mode == 0) {
$query = $query . "dty_JsonTermIDTree";
} else {
if ($dt_mode == 1) {
$query = $query . "dty_TermIDTreeNonSelectableIDs";
} else {
if ($dt_mode == 2) {
$query = $query . "dty_PtrTargetRectypeIDs";
} else {
continue;
}
}
}
$query = $query . "='" . $dt_val . "' where dty_ID=" . $dt_id;
$k++;
$res = mysql_query($query);
if (mysql_error()) {
$rv['error'] = "SQL error updating field type " . $dt_id . ": " . mysql_error();
print json_format($rv);
return;
}
}
//for
$rv['result'] = $k . " field" . ($k > 1 ? "s have" : " has") . " been repaired. If you have unsaved data in an edit form, save your changes and reload the page to apply revised/corrected field definitions";
print json_format($rv);
$deletions = array();
$additions = array();
foreach ($actions as $action) {
$kwd_id = intval(substr($action, 4));
if (!$kwd_id) {
continue;
}
if (substr($action, 0, 3) == "del") {
$deletions[$kwd_id] = $kwd_id;
unset($additions[$kwd_id]);
} else {
if (substr($action, 0, 3) == "add") {
$additions[$kwd_id] = $kwd_id;
unset($deletions[$kwd_id]);
}
}
}
if (count($deletions) > 0) {
mysql_query("delete from usrRecTagLinks where rtl_RecID={$rec_id} and rtl_TagID in (" . join($deletions, ",") . ")");
}
if (count($additions) > 0) {
$query = "insert into usrRecTagLinks (rtl_TagID, rtl_RecID) values (" . join(",{$rec_id}), (", $additions) . ",{$rec_id})";
mysql_query($query);
}
$res = mysql_query("select tag_ID from usrRecTagLinks, usrTags where rtl_TagID=tag_ID and rtl_RecID={$rec_id}");
$kwd_ids = array();
while ($row = mysql_fetch_row($res)) {
array_push($kwd_ids, $row[0]);
}
print "(" . json_format($kwd_ids) . ")";
}
