function main()
{
$text = '';
$format = '';
if (isset($_POST['text']) && $_POST['text'] != '') {
$text = $_POST['text'];
$format = $_POST['format'];
find_specimens($text, $format);
} else {
display_form();
}
}
//echo $json;
$reference = json_decode($json);
$page_count = 1;
foreach ($reference->bhl_pages as $k => $PageID) {
// URI for page so we can locate annotations
$uri = 'http://biostor.org/reference/' . $id . '/page/' . $page_count;
// fetch page
$url = 'http://localhost/~rpage/biostor/api.php?page=' . $PageID . '&format=html';
$json = get($url);
//echo $json;
$obj = json_decode($json);
if (isset($obj->html)) {
$page = html_to_page($obj->html);
$hits = array();
if (0) {
$hits = array_merge($hits, find_specimens($page->text));
}
if (1) {
$hits = array_merge($hits, find_points($page->text));
}
if (0) {
$hits = array_merge($hits, find_genbank($page->text));
}
$annotations = annotations_from_hits($uri, $page, $hits);
echo "annotations\n";
print_r($annotations);
foreach ($annotations as $annotation) {
echo json_encode($annotation->data);
$h->add_annotation($annotation->data);
echo "\n";
}
