function PrintMsg($f, $level)
{
global $l10nstr;
global $table;
global $FirstMsg;
global $ThreadTop;
global $ShowMsg;
global $mainfile;
global $editscript;
global $descscript;
global $banscript;
global $scriptsurl;
global $addfilescript;
global $nulfrm;
global $userfiles;
global $MsgPerPage;
global $msgread;
global $IsManager;
global $name;
$query = "SELECT * FROM {$table} WHERE ancestor={$f}";
if ($f == 0 && $FirstMsg > 0) {
$query .= " AND num<={$FirstMsg}";
}
if ($f == 0) {
if ($ThreadTop) {
$query .= " AND num={$ThreadTop}";
}
$query .= " ORDER BY lastmod DESC, date DESC, time DESC";
$query .= " LIMIT {$MsgPerPage}";
//print "$query<BR>\n";
} else {
$query .= " ORDER BY date DESC, time DESC";
}
$result = mysql_query($query);
if (!$result) {
echo mysql_error();
exit;
}
if (mysql_num_rows($result) == 0) {
return;
}
/* end of recursive call */
while ($line = mysql_fetch_array($result, MYSQL_ASSOC)) {
$msgnum = $line['num'];
$title = $line['title'];
$user = $line['name'];
$title = SpecialCodes($title);
//print "<LI type=disc dir=RTL><BIG><A id=t$msgnum HREF=\"javascript:void(0)\" onclick=\"blocking('msg$msgnum', 't$msgnum')\">$title</A></BIG> - ";
// search if message was read...
/* if($level == 0)
print "<BR>\n";
print "<LI type=disc dir=RTL>"; */
if ($level == 0) {
print "<TABLE width=100% height=\$3px><TR><TD></TABLE>\n";
}
print "<TABLE dir=RTL border=0 width=100% cellpadding=0 cellspacing=0>\n";
print "<TR>\n";
print "<TD width={$i}%>\n";
print "<TD dir=RTL>\n";
if ($level == 0) {
print "<UL><LI type=disk>";
} else {
print "<UL><LI type=circle>";
}
if (array_search($msgnum, $msgread)) {
print "<A id=t{$msgnum} HREF={$nulfrm}?msg={$msgnum}&forum={$table} target=trce onclick=\"blocking('msg{$msgnum}', 't{$msgnum}')\"><FONT color=#ff0000>{$title}</FONT></A>";
} else {
print "<A id=t{$msgnum} HREF={$nulfrm}?msg={$msgnum}&forum={$table} target=trce onclick=\"blocking('msg{$msgnum}', 't{$msgnum}')\">{$title}</A>";
}
print "<TD width=20%>\n";
print "<A HREF={$descscript}?action=user&usrname={$user}&forum={$table} target=_blank>";
$alias = GetAlias($user);
if (IsForumManager($user)) {
print "<BIG><B><FONT color=blue>{$alias}</FONT></B></BIG></A>\n";
} else {
if ($user == $name) {
print "<BIG><B><FONT color=black>{$alias}</FONT></B></BIG></A>\n";
} else {
print "{$alias}</A>\n";
}
}
$date = $line['date'];
$time = $line['time'];
$datearr = explode('-', $date);
$timearr = explode(':', $time);
$datetimestr = GetTimeStr($timearr[0], $timearr[1], $timearr[2], $datearr[1], $datearr[2], $datearr[0]);
// $date = "$datearr[2]/$datearr[1]/$datearr[0]";
print "<TD width=25%>\n";
print "<FONT dir=LTR>";
print "{$datetimestr}</FONT></LI>\n";
/* Put message contents as DIV that will be displayed when clicking on message */
$contents = $line['contents'];
$contents = SpecialCodes($contents);
print "<TR>\n";
$i = $level * 2;
print "<TD width={$i}%>\n";
print "<TD bgcolor=#fff8ff colspan=3>\n";
if ($ShowMsg == $msgnum) {
print "<DIV id=msg{$msgnum}>";
} else {
print "<DIV class=para id=msg{$msgnum}>";
}
print "{$contents}<BR>\n";
$pic = $line['picture'];
if (!empty($pic)) {
$ext = GetExt($pic);
if (IsImg($ext)) {
$s = getimagesize("{$userfiles}/{$pic}");
$w = $s[0];
$h = $s[1];
if ($w > 100) {
$ar = $h / $w;
$h = 100 * $ar;
$w = 100;
}
print "<A HREF={$userfiles}/{$pic}><IMG SRC={$userfiles}/{$pic} width={$w} height={$h} border=0></A><BR><BR>\n";
} else {
print "<A HREF={$userfiles}/{$pic}>";
print "מצורף קובץ: ";
print "{$ext}</A><BR>\n";
}
}
$url = $line['url1'];
$urldesc = $line['urldesc1'];
if (!empty($urldesc) && !empty($url)) {
print "<A HREF={$url} target=_blank>{$urldesc}</A><BR>\n";
}
$url = $line['url2'];
$urldesc = $line['urldesc2'];
if (!empty($urldesc) && !empty($url)) {
print "<A HREF={$url} target=_blank>{$urldesc}</A><BR>\n";
}
$url = $line['url3'];
$urldesc = $line['urldesc3'];
if (!empty($urldesc) && !empty($url)) {
print "<A HREF={$url} target=_blank>{$urldesc}</A><BR>\n";
}
print "<BR><A href={$editscript}?forum={$table}&action=reply&ancestor={$msgnum}>{$l10nstr['22']}</A>\n";
/* response */
if (editable($user)) {
print " \n";
print "<A href={$editscript}?forum={$table}&action=edit&num={$msgnum}>{$l10nstr['23']}</A>\n";
/* edit message */
print " \n";
print "<A HREF=\"javascript:void(0)\" onclick=\"javascript:AddFile('{$addfilescript}?forum={$table}&num={$msgnum}');\">";
print "{$l10nstr['24']}";
/* add file to message */
print "</A>\n";
}
if (deleteable($user, $msgnum)) {
print " \n";
print "<A href={$editscript}?forum={$table}&action=delete&num={$msgnum}>{$l10nstr['25']}</A>\n";
/* delete message */
}
if ($IsManager) {
print " <A HREF={$banscript}?forum={$table}&user={$user}>{$l10nstr['26']}</A>\n";
/* ban a user */
print " {$msgnum}\n";
}
print "<BR><BR></DIV>\n";
print "</TABLE>\n";
/* spacing table */
print "<TABLE width=100% height=\$3px><TR><TD></TABLE>\n";
/* recursive call */
PrintMsg($msgnum, $level + 1);
}
}
function render_row(&$row)
{
global $gDisableEditing;
$html = "";
$this->row_transition($row);
$id_prefix = "v_{$row['variant_id']}__a_{$row['article_pmid']}__g_{$row['genome_id']}__d_{$row['disease_id']}__p_{$row['edit_id']}__";
$title = "";
foreach (array("article_pmid", "genome_id", "disease_id") as $keyfield) {
if (strlen($row[$keyfield]) == 0) {
$row[$keyfield] = 0;
}
}
if ($row["disease_id"] != "0") {
$tr = editable("{$id_prefix}f_summary_short__8x1__oddsratio", $row["summary_short"], $row["disease_name"] . "<BR />", array("rownumber" => $this->rownumber, "tip" => "Indicate the contribution of this article to OR statistics for " . htmlspecialchars($row["disease_name"]) . "."));
if ($tr != "") {
if ($this->rownumber == 0) {
$html .= $this->starttable;
}
$html .= $tr;
++$this->rownumber;
}
} else {
if ($row["article_pmid"] != "0") {
$html .= "<A name=\"a" . htmlentities($row["article_pmid"]) . "\"></A>\n";
$summary = article_get_summary($row["article_pmid"]);
$html .= editable("{$id_prefix}f_summary_short__70x8__textile", $row[summary_short], $summary . "<BR />", array("tip" => "Explain this article's contribution to the conclusions drawn in the variant summary above."));
} else {
if ($row["genome_id"] != "0") {
$html .= "<A name=\"g" . $row["genome_id"] . "\"></A>\n";
// Pick the most human-readable name for this genome/person
if (!($name = $row["name"])) {
if (!($name = $row["global_human_id"])) {
$name = "[" . $row["genome_id"] . "]";
}
}
$name = htmlspecialchars($name);
// Link to the full genome(s)
if ($row["dataset_count"] > 0) {
$name = "<A href=\"{$row['dataset_url']}\">{$name}</A>";
}
if ($row["dataset_count"] > 1) {
$more = $row["dataset_count"] - 1;
$name .= " (";
if ($row["dataset_url_2"]) {
$name .= "<A href=\"{$row['dataset_url_2']}\">alternate</A>, ";
--$more;
}
if ($more > 1) {
$name .= "plus {$more} other data sets";
} else {
if ($more == 1) {
$name .= "plus 1 other data set";
} else {
$name = ereg_replace(", \$", "", $name);
}
}
$name .= ")";
}
// Indicate the SNP that causes the variant
if ($row["chr"]) {
$name .= htmlspecialchars("\n" . substr($row["zygosity"], 0, 3) . " " . $row["allele"] . " @ " . $row["chr"] . ":" . $row["chr_pos"]);
$name = nl2br($name);
}
$html .= editable("{$id_prefix}f_summary_short__70x8__textile", $row[summary_short], $name);
} else {
if ($row["disease_id"] != "0") {
// Disease summary not attached to any particular publication
} else {
$html .= editable("{$id_prefix}f_summary_short__70x8__textile", $row[summary_short], "Short summary", array("tip" => "Provide a one line summary of clinical action to be undertaken given this variant (possibly modified by known phenotypes)."));
$html .= editable("{$id_prefix}f_variant_quality", $row, "Variant quality");
global $gImpactOptions;
$opts =& $gImpactOptions;
$qualified_impact = evidence_qualify_impact($row["variant_quality"], $row["variant_impact"]);
$html .= editable("{$id_prefix}f_variant_impact__", $row["variant_impact"], "Impact", array("select_options" => $opts, "previewtextile" => $qualified_impact, "tip" => "Categorize the expected impact of this variant."));
if (strtolower($qualified_impact) != strtolower($row["variant_impact"])) {
$html .= "<P><I>(The \"" . strtolower(eregi_replace(",? " . $row["variant_impact"], "", $qualified_impact)) . "\" qualifier is assigned automatically based on the above evidence and importance scores.)</I></P>";
}
global $gInheritanceOptions;
$html .= editable("{$id_prefix}f_variant_dominance__", $row[variant_dominance], "Inheritance pattern", array("select_options" => $gInheritanceOptions));
$html .= editable("{$id_prefix}f_summary_long__70x8__textile", $row[summary_long], "Summary of published research, and additional commentary", array("tip" => "Provide a comprehensive review of the variant including youngest age of onset, oldest age of onset and oldest asymptomatic individual."));
}
}
}
}
if ($html == "") {
return;
}
if (ereg('^<(TABLE|TR)', $html)) {
// TODO: handle is_delete and flag_edited_id for table rows
// somehow; for now just don't indicate them at all
if ($row["is_delete"]) {
return;
}
if ($row["flag_edited_id"]) {
$this->html .= $html;
return;
}
} else {
if (!$gDisableEditing && getCurrentUser() || 0 < strlen($row["talk_text"])) {
$show_label = 0 < strlen($row["talk_text"]) ? "<B>show discussion</B>" : "start discussion";
$html .= "<DIV class=\"rectangle-speech-border-hidden\"><DIV>{$show_label}</DIV>";
$html .= editable("{$id_prefix}f_talk_text__70x8__textile", $row[talk_text], "Discussion<BR />", array("tip" => "Comments about this section"));
$html .= "</DIV>";
}
}
if ($row["is_delete"]) {
$html .= "<DIV style=\"outline: 1px dashed #300; background-color: #fdd; color: #300; padding: 20px 20px 0 20px; margin: 0 0 10px 0;\"><P>Deleted in this revision:</P>{$html}</DIV>";
} else {
if ($row["flag_edited_id"]) {
if ($row["previous_edit_id"]) {
$edited = "Edited";
} else {
$edited = "Added";
}
$html = "<DIV style=\"outline: 1px dashed #300; background-color: #dfd; color: #300; padding: 20px 20px 0 20px; margin: 0 0 10px 0;\"><P>{$edited} in this revision:</P>\n{$html}</DIV>";
}
}
$this->html .= $html;
}
<ul id="page-nav">
<?php
?>
<?php
foreach ($nav_items as $item) {
$item_slug = strtolower($item);
$active = $page_slugs[1] === $item_slug ? ' class="active"' : '';
echo '<li' . $active . '><a href="?section=' . $item_slug . '"><span>' . $item . '</span></a></li>';
}
?>
</ul>
</div>
<div class="right">
<ul id="control-panel">
<li id="edit"<?php
editable($page);
?>
><a href="?section=<?php
echo $page_slugs[1];
?>
&edit=<?php
echo $page['id'];
?>
"><i class="ion-edit"></i>Edit</a></li>
<li id="settings"><a href="#"><i class="fa fa-cog"></i></a></li>
<li id="home"><a href="/"><i class="fa fa-home"></i></a></li>
<li id="logout"><a href="#"><i class="fa fa-sign-out"></i></a></li>
<li id="profile">
<a href="#">
<span class="name">Admin</span>
<div class="avatar" style="background-image: url('images/test-avatar.jpg');"></div>
