private function setup_tag($id, $tag)
{
$error = -1;
$result = tag_item('algorithm_setup', $id, $tag, $this->user_id, $error);
//update index
$this->elasticsearch->index('setup', $id);
if ($result == false) {
$this->returnError($error, $this->version);
} else {
$this->xmlContents('entity-tag', $this->version, array('id' => $id, 'type' => 'setup'));
}
}
function insertImplementationFromXML($xml, $configuration, $implementation_base = array())
{
$ci =& get_instance();
$implementation_objects = all_tags_from_xml($xml, array_custom_filter($configuration, array('plain', 'array')));
$implementation = all_tags_from_xml($xml, array_custom_filter($configuration, array('string', 'csv')), $implementation_base);
// insert the implementation itself
$version = $ci->Implementation->incrementVersionNumber($implementation['name']);
$implementation['fullName'] = $implementation['name'] . '(' . $version . ')';
$implementation['version'] = $version;
if (array_key_exists('source_md5', $implementation)) {
if (array_key_exists('external_version', $implementation) === false) {
$implementation['external_version'] = $implementation['source_md5'];
}
} elseif (array_key_exists('binary_md5', $implementation)) {
if (array_key_exists('external_version', $implementation) === false) {
$implementation['external_version'] = $implementation['binary_md5'];
}
}
if (array_key_exists('implements', $implementation)) {
if (in_array($implementation['implements'], $ci->supportedMetrics) == false && in_array($implementation['implements'], $ci->supportedAlgorithms == false)) {
return false;
}
}
// information illegal to insert
unset($implementation['source_md5']);
unset($implementation['binary_md5']);
// tags also not insertable. but handled differently.
$tags = array();
if (array_key_exists('tag', $implementation)) {
$tags = str_getcsv($implementation['tag']);
unset($implementation['tag']);
}
$res = $ci->Implementation->insert($implementation);
if ($res === false) {
return false;
}
foreach ($tags as $tag) {
$error = -1;
tag_item('implementation', $res, $tag, $implementation_base['uploader'], $error);
}
// add to elastic search index.
$ci->elasticsearch->index('flow', $res);
// insert all important "components"
foreach ($implementation_objects as $key => $value) {
if ($key == 'component') {
foreach ($value as $entry) {
$component = $entry->implementation->children('oml', true);
$similarComponent = $ci->Implementation->compareToXml($entry->implementation);
if ($similarComponent === false) {
$component->version = $ci->Implementation->incrementVersionNumber($component->name);
$componentFullName = $component->name . '(' . $component->version . ')';
$succes = insertImplementationFromXML($component, $configuration, array('uploadDate' => now(), 'uploader' => $implementation['uploader']));
if ($succes == false) {
return false;
}
$ci->Implementation->addComponent($res, $succes, trim($entry->identifier));
} else {
$ci->Implementation->addComponent($res, $similarComponent, trim($entry->identifier));
}
}
} elseif ($key == 'bibliographical_reference') {
foreach ($value as $entry) {
$children = $entry->children('oml', true);
$children->implementation_id = $res;
$succes = $ci->Bibliographical_reference->insert($children);
}
} elseif ($key == 'parameter') {
foreach ($value as $entry) {
$children = $entry->children('oml', true);
$succes = $ci->Input->insert(array('fullName' => $implementation['fullName'] . '_' . $children->name, 'implementation_id' => $res, 'name' => trim($children->name), 'defaultValue' => property_exists($children, 'default_value') ? trim($children->default_value) : null, 'description' => property_exists($children, 'description') ? trim($children->description) : null, 'dataType' => property_exists($children, 'data_type') ? trim($children->data_type) : null, 'recommendedRange' => property_exists($children, 'recommended_range') ? trim($children->recommendedRange) : null));
}
}
}
return $res;
}
private function _openml_setup_tag()
{
$id = $this->input->get('setup_id');
$tag = $this->input->get('tag');
$error = -1;
$result = tag_item('algorithm_setup', $id, $tag, $this->user_id, $error);
//update index
$this->elasticsearch->index('setup', $id);
if ($result == false) {
$this->_returnError($error);
} else {
$this->_xmlContents('entity-tag', array('id' => $id, 'type' => 'setup'));
}
}
