public function view($term, $pageID)
{
//require_once 'JsonClientUtil.php';
require_once 'ServiceUtil.php';
require_once 'Config.php';
$myConfig = new Config();
$myConfig->loadJsonConfig($data);
$util = new ServiceUtil();
$data['test'] = NULL;
$term = str_replace("_", "%20", $term);
//$term = str_replace("/", "%2F", $term);
$startPoint = ($pageID - 1) * 20;
$result = $util->expandTerm($term);
$terms = $util->parseExpandedTerm($result, $term);
//$litResult = searchLiteratureByYearUsingSolr($terms,$startPoint,20,"*",$year);
$litResult = $util->searchLatestLiterature($terms, $startPoint, 20, "*", "*");
$data['publications'] = $litResult;
$data['term'] = $term;
$data['pageID'] = $pageID;
$data['page_title'] = "Literature:" . str_replace("%20", " ", $term);
$data['enable_config'] = true;
$this->load->view('templates/header2', $data);
$this->load->view('pages/latestPublicationDisplay', $data);
$this->load->view('templates/footer2', $data);
}
public function summary($page)
{
require_once 'ServiceUtil.php';
$util = new ServiceUtil();
require_once 'Config.php';
$myConfig = new Config();
$myConfig->loadJsonConfig($data);
$pageName = NULL;
$termObj = NULL;
$pageName = $page;
$pos = strpos($pageName, ":");
//echo "----pos:".$pos;
if ($pos == false) {
$pageName = str_replace("_", "%20", $page);
$pageName = str_replace(",", "%2c", $pageName);
$data["page"] = $page;
}
$isNifID = false;
$originalPageName = "";
if ($pos != false) {
$termObj[0] = $util->getObjByCurie($pageName);
#echo "\n-------Willy----!is_null(termObj):".!is_null($termObj)."\n";
if (!is_null($termObj) && !is_null($termObj[0])) {
$data['curie'] = $termObj[0]->curie;
if (count($termObj[0]->labels) > 0) {
$data['pageName'] = $termObj[0]->labels[0];
$pageName = $data['pageName'];
$originalPageName = $pageName;
$pageName = str_replace(" ", "%20", $pageName);
$pageName = str_replace(",", "%2c", $pageName);
$data['pageName'] = $pageName;
$isNifID = true;
} else {
$data['pageName'] = $pageName;
}
} else {
$data['pageName'] = $pageName;
$termObj = getTerm($pageName);
}
}
$pageName = str_replace(str_split('_'), '%20', $pageName);
$pageName = str_replace(str_split(','), '%2c', $pageName);
$pageName = str_replace(str_split('/'), '%2f', $pageName);
$data['pageName'] = $pageName;
$data['page_title'] = $pageName;
$data['enable_config'] = true;
$stitle = "";
if (!$isNifID) {
$stitle = ucfirst($page);
$stitle = str_replace("_", " ", $stitle);
$data['title'] = $stitle;
} else {
$stitle = $originalPageName;
$data['title'] = $stitle;
}
$this->handleDataSpace($data, $pageName);
$this->load->view('api/view_summary', $data);
}
public function view($page)
{
require_once 'ServiceUtil.php';
require_once 'Config.php';
$myConfig = new Config();
$myConfig->loadJsonConfig($data);
$pageName = $page;
$pageName = str_replace(str_split('_'), '%20', $pageName);
$pageName = str_replace(str_split(','), '%2c', $pageName);
$util = new ServiceUtil();
$termObj = $util->getTerm($pageName);
//var_dump($termObj);
if (!is_null($termObj) && count($termObj) > 0) {
$data['termObj'] = $termObj;
$page_title = $pageName = str_replace(str_split('_,'), ' ', $pageName);
$data['page_title'] = "Term:" . $page_title;
$data['enable_config'] = false;
$this->load->view('templates/header2', $data);
$this->load->view('pages/DisplayTermLanding', $data);
$this->load->view('templates/footer2', $data);
} else {
show_404();
}
}
private function doSearch($keywords)
{
$protocol = !empty($_SERVER['HTTPS']) && $_SERVER['HTTPS'] !== 'off' || $_SERVER['SERVER_PORT'] == 443 ? "https://" : "http://";
//$protocol = "http";
$domainName = $_SERVER['HTTP_HOST'];
require_once 'ServiceUtil.php';
require_once 'Config.php';
$this->load->helper('url');
$myConfig = new Config();
$myConfig->loadJsonConfig($data);
$util = new ServiceUtil();
$keywords = str_replace(" ", "%20", $keywords);
/*$sources = $this->loadSourcesConfig($data);
if($sources != null)
{
$data['ks_sources'] = $sources;
}*/
//Loading categories configurations
/*$categories = $this->loadCategoriesConfig($data);
if($categories != null)
{
$data['categories'] = $categories;
}*/
$termResult = $util->getTerm($keywords);
//var_dump($termResult);
$termSize = 0;
if (!is_null($termResult)) {
$termSize = count($termResult);
}
//echo "------Term size:".$termSize."<br/>\n";
if ($termSize == 1) {
//echo "------Curie:".$termResult[0]->curie."<br/>\n";
if (isset($termResult[0]->curie)) {
//echo "<br/><center>Redirecting to ".$termResult[0]->curie." ...</center>";
//redirect($protocol."://".$domainName."/".Config::$localContextName."/index.php/pages/view/".$termResult[0]->curie, 'refresh');
redirect($protocol . $domainName . "/" . Config::$localContextName . "/index.php/pages/view/" . $termResult[0]->curie, 'location', 301);
}
return;
}
$searchResult = $util->searchTerm($keywords);
$data['keywords'] = $keywords;
$data['termResult'] = $termResult;
if (!is_null($termResult)) {
$searchResult = array_merge($termResult, $searchResult);
$unique = array();
$uniqueArray = array();
foreach ($searchResult as $row) {
if (isset($unique[$row->curie])) {
continue;
} else {
$unique[$row->curie] = $row->curie;
array_push($uniqueArray, $row);
}
}
$searchResult = $uniqueArray;
}
$data['searchResult'] = $searchResult;
$data['page_title'] = "Search";
$data['enable_config'] = false;
$data['disableTopSearchBar'] = true;
//var_dump($termResult);
$this->load->view('templates/header2', $data);
//$this->load->view('pages/'.$page, $data);
$this->load->view('pages/search_result', $data);
$this->load->view('templates/footer2', $data);
}
public function view($term, $sourceID, $pageID)
{
require_once 'ServiceUtil.php';
require_once 'Config.php';
$myConfig = new Config();
$myConfig->loadJsonConfig($data);
$page = $term;
$data["pageName"] = $page;
$util = new ServiceUtil();
/*$ks_selected_sources = $_COOKIE['ks_selected_sources'];
$selectedSourcesArray =null;
if($ks_selected_sources!= null)
{
$selectedSourcesArray = explode(",", $ks_selected_sources);
$data['ks_selected_sources'] = $selectedSourcesArray;
}
$ks_sources = $util->loadSourcesConfig($data);
$sourceNameArray = $this->handleSourceNames($ks_sources);
$data['sourceNameArray'] = $sourceNameArray;*/
//if($sources != null)
//{
// $data['ks_sources'] = $sources;
//
//}
$selectedSourcesArray = $data['ks_sources'];
$result = array();
$description = array();
if ($selectedSourcesArray != null) {
$newName = $this->fixSearchName($page);
foreach ($selectedSourcesArray as $source) {
if (strcmp($sourceID, $source) == 0) {
$offset = 0;
if (!isset($pageID) || $pageID <= 1) {
$offset = 0;
} else {
$offset = ($pageID - 1) * 20;
}
//$result[$source] =$this->handleData($data,$page,$source,20,$offset);
//$result[$source] =$this->handleData($data,$newName,$source,20,$offset);
$result[$source] = $util->searchWithinSource($newName, $source, 20, $offset);
} else {
//$result[$source] =$this->handleData($data,$newName,$source,20,0);
$result[$source] = $util->searchWithinSource($newName, $source, 20, 0);
//var_dump($source);
//var_dump($data);
//echo "-----".$newName;
//echo "-----".$source;
}
$description[$source] = $this->getDescription($source, $myConfig);
}
}
$data['result'] = $result;
$data['description'] = $description;
if (strcmp($sourceID, "0") != 0) {
$data['selectedSourceID'] = $sourceID;
$data['selectedPageID'] = $pageID;
} else {
$data['selectedSourceID'] = 0;
$data['selectedPageID'] = 0;
}
//$this->load->view('templates/header', $data);
$this->load->view('pages/viewAllData', $data);
//$this->load->view('templates/footer', $data);
}
private function handleLexicon(&$data, $curie, $tempParentID)
{
require_once 'ServiceUtil.php';
require_once 'Config.php';
$util = new ServiceUtil();
$data['curie'] = $curie;
$treeObj = $util->getTreeObj($curie);
$data['treeObj'] = $treeObj;
$parentID = $tempParentID;
if (strcmp($parentID, "none") == 0) {
$parentID = $util->getParentID($treeObj, $curie);
}
$data['parentID'] = $parentID;
$node = $util->getNode($treeObj, $parentID);
$data['node'] = $node;
$mainNode = $util->getNode($treeObj, $curie);
$data['mainNode'] = $mainNode;
$list = $util->getChildrenIDs($treeObj, $curie);
$data['list'] = $list;
$leafHTML = "";
$list->setIteratorMode(SplDoublyLinkedList::IT_MODE_FIFO);
for ($list->rewind(); $list->valid(); $list->next()) {
$item = $list->current();
$leaf = $util->getNode($treeObj, $item);
$leafLinkName = str_replace(" ", "_", $leaf->lbl);
$leafLinkName = str_replace("(", "_", $leafLinkName);
$leafLinkName = str_replace(")", "_", $leafLinkName);
//$leafLink = "/SciCrunchKS/index.php/pages/view/".$leafLinkName;
$leafLink = "/" . Config::$localContextName . "/index.php/pages/view/" . $leaf->id;
//$leafHTML = $leafHTML . "<ul><li><span><i class=\"icon-leaf\"></i><a href=\"".$leafLink."\">" . $leaf->lbl . "</a></span> <a href=\"\"></a></li></ul>\n";
$leafHTML = $leafHTML . "<ul><li><span id=\"" . $leaf->id . "," . $mainNode->id . "\"><i class=\"icon-plus-sign\"></i>" . $leaf->lbl . "</span> <a href=\"" . $leafLink . "\"><img src=\"/img/view-icon.png\" width=\"25\" height=\"25\"></a></li></ul>\n";
}
$data['leafHTML'] = $leafHTML;
$myConfig = new Config();
$myConfig->loadJsonConfig($data);
$util = new ServiceUtil();
//$list2 = $util->getOtherChildrenIDs($treeObj, $curie,PropertyConfig::$has_proper_part);
$list2 = $util->getOtherChildrenIDs($treeObj, $curie, $data["config_array"]->has_proper_part_property);
//$partOfParentID = $util->getOtherParentID($treeObj, $curie,PropertyConfig::$has_proper_part);
$partOfParentID = $util->getOtherParentID($treeObj, $curie, $data["config_array"]->has_proper_part_property);
$partOfParenttNode = $util->getNode($treeObj, $partOfParentID);
$data['node2'] = $partOfParenttNode;
$leafHTML = null;
$list2->setIteratorMode(SplDoublyLinkedList::IT_MODE_FIFO);
for ($list2->rewind(); $list2->valid(); $list2->next()) {
$item = $list2->current();
$leaf = $util->getNode($treeObj, $item);
$leafLinkName = str_replace(" ", "_", $leaf->lbl);
$leafLinkName = str_replace("(", "_", $leafLinkName);
$leafLinkName = str_replace(")", "_", $leafLinkName);
//$leafLink = "/SciCrunchKS/index.php/pages/view/".$leafLinkName;
$leafLink = "/" . Config::$localContextName . "/index.php/pages/view/" . $leaf->id;
//$leafHTML = $leafHTML . "<ul><li><span><i class=\"icon-leaf\"></i><a href=\"".$leafLink."\">" . $leaf->lbl . "</a></span> <a href=\"\"></a></li></ul>\n";
$leafHTML = $leafHTML . "<ul><li><span id=\"" . $leaf->id . "," . $mainNode->id . "\"><i class=\"icon-plus-sign\"></i>" . $leaf->lbl . "</span> <a href=\"" . $leafLink . "\"><img src=\"/img/view-icon.png\" width=\"25\" height=\"25\"></a></li></ul>\n";
}
$data['leafHTML2'] = $leafHTML;
//$list3 = $util->getChildrenIDsIncoming($treeObj, $curie,PropertyConfig::$part_of);
$list3 = $util->getChildrenIDsIncoming($treeObj, $curie, $data["config_array"]->part_of_property);
//$partOfParentID3 = $util->getParentIDIncoming($treeObj, $curie,PropertyConfig::$part_of);
$partOfParentID3 = $util->getParentIDIncoming($treeObj, $curie, $data["config_array"]->part_of_property);
$partOfParenttNode3 = $util->getNode($treeObj, $partOfParentID3);
$data['node3'] = $partOfParenttNode3;
$leafHTML = null;
$list3->setIteratorMode(SplDoublyLinkedList::IT_MODE_FIFO);
for ($list3->rewind(); $list3->valid(); $list3->next()) {
$item = $list3->current();
$leaf = $util->getNode($treeObj, $item);
$leafLinkName = str_replace(" ", "_", $leaf->lbl);
$leafLinkName = str_replace("(", "_", $leafLinkName);
$leafLinkName = str_replace(")", "_", $leafLinkName);
//$leafLink = "/SciCrunchKS/index.php/pages/view/".$leafLinkName;
$leafLink = "/" . Config::$localContextName . "/index.php/pages/view/" . $leaf->id;
//$leafHTML = $leafHTML . "<ul><li><span><i class=\"icon-leaf\"></i><a href=\"".$leafLink."\">" . $leaf->lbl . "</a></span> <a href=\"\"></a></li></ul>\n";
$leafHTML = $leafHTML . "<ul><li><span id=\"" . $leaf->id . "," . $mainNode->id . "\"><i class=\"icon-plus-sign\"></i>" . $leaf->lbl . "</span> <a href=\"" . $leafLink . "\"><img src=\"/img/view-icon.png\" width=\"25\" height=\"25\"></a></li></ul>\n";
}
$data['leafHTML3'] = $leafHTML;
/********************Loop properties***************************/
$relation_array = array();
$properties = $data["config_array"]->properties_included;
foreach ($properties as $property) {
//echo "<br/>".$property->name."-------".$property->value."\n";
/*$tempList = $util->getChildrenIDsIncoming($treeObj, $curie,$property->value);
$tempParentID = $util->getParentIDIncoming($treeObj, $curie,$property->value);*/
$tempList = NULL;
$tempParentID = NULL;
if (strcmp($property->direction, "in-coming")) {
$tempList = $util->getChildrenIDsIncoming($treeObj, $curie, $property->value);
$tempParentID = $util->getParentIDIncoming($treeObj, $curie, $property->value);
} else {
if (strcmp($property->direction, "out-going")) {
$tempList = $util->getOtherChildrenIDs($treeObj, $curie, $property->value);
$tempParentID = $util->getOtherParentID($treeObj, $curie, $property->value);
}
}
$tempPrarentNode = $util->getNode($treeObj, $tempParentID);
$leafHTML = null;
$tempList->setIteratorMode(SplDoublyLinkedList::IT_MODE_FIFO);
for ($tempList->rewind(); $tempList->valid(); $tempList->next()) {
$item = $tempList->current();
$leaf = $util->getNode($treeObj, $item);
$leafLinkName = str_replace(" ", "_", $leaf->lbl);
$leafLinkName = str_replace("(", "_", $leafLinkName);
$leafLinkName = str_replace(")", "_", $leafLinkName);
//$leafLink = "/SciCrunchKS/index.php/pages/view/".$leafLinkName;
$leafLink = "/" . Config::$localContextName . "/index.php/pages/view/" . $leaf->id;
//$leafHTML = $leafHTML . "<ul><li><span><i class=\"icon-leaf\"></i><a href=\"".$leafLink."\">" . $leaf->lbl . "</a></span> <a href=\"\"></a></li></ul>\n";
$leafHTML = $leafHTML . "<ul><li><span id=\"" . $leaf->id . "," . $mainNode->id . "\"><i class=\"icon-plus-sign\"></i>" . $leaf->lbl . "</span> <a href=\"" . $leafLink . "\"><img src=\"/img/view-icon.png\" width=\"25\" height=\"25\"></a></li></ul>\n";
}
$ctree = new CustomTree();
$ctree->parentNode = $tempPrarentNode;
$ctree->mainNode = $mainNode;
$ctree->leafHtml = $leafHTML;
$relation_array[$property->name] = $ctree;
}
$data["relation_array"] = $relation_array;
}
private function handleLexicon(&$data, $curie, $tempParentID)
{
require_once 'ServiceUtil.php';
$util = new ServiceUtil();
$data['curie'] = $curie;
$treeObj = $util->getTreeObj($curie);
$data['treeObj'] = $treeObj;
$parentID = $tempParentID;
if (strcmp($parentID, "none") == 0) {
$parentID = $util->getParentID($treeObj, $curie);
}
$data['parentID'] = $parentID;
$node = $util->getNode($treeObj, $parentID);
$data['node'] = $node;
$mainNode = $util->getNode($treeObj, $curie);
$data['mainNode'] = $mainNode;
$list = $util->getChildrenIDs($treeObj, $curie);
$data['list'] = $list;
$leafHTML = "";
$list->setIteratorMode(SplDoublyLinkedList::IT_MODE_FIFO);
for ($list->rewind(); $list->valid(); $list->next()) {
$item = $list->current();
$leaf = $util->getNode($treeObj, $item);
$leafLinkName = str_replace(" ", "_", $leaf->lbl);
$leafLinkName = str_replace("(", "_", $leafLinkName);
$leafLinkName = str_replace(")", "_", $leafLinkName);
//$leafLink = "/SciCrunchKS/index.php/pages/view/".$leafLinkName;
$leafLink = "/" . Config::$localContextName . "/index.php/pages/view/" . $leaf->id;
//$leafHTML = $leafHTML . "<ul><li><span><i class=\"icon-leaf\"></i><a href=\"".$leafLink."\">" . $leaf->lbl . "</a></span> <a href=\"\"></a></li></ul>\n";
$leafHTML = $leafHTML . "<ul><li><span id=\"" . $leaf->id . "," . $mainNode->id . "\"><i class=\"icon-plus-sign\"></i>" . $leaf->lbl . "</span> <a href=\"" . $leafLink . "\"><img src=\"/img/view-icon.png\" width=\"25\" height=\"25\"></a></li></ul>\n";
}
$data['leafHTML'] = $leafHTML;
require_once 'ServiceUtil.php';
//require_once('PropertyConfig.php');
require_once 'Config.php';
$myConfig = new Config();
$myConfig->loadJsonConfig($data);
$util = new ServiceUtil();
//$list2 = $util->getOtherChildrenIDs($treeObj, $curie,PropertyConfig::$has_proper_part);
$list2 = $util->getOtherChildrenIDs($treeObj, $curie, $data["config_array"]->has_proper_part_property);
//$partOfParentID = $util->getOtherParentID($treeObj, $curie,PropertyConfig::$has_proper_part);
$partOfParentID = $util->getOtherParentID($treeObj, $curie, $data["config_array"]->has_proper_part_property);
$partOfParenttNode = $util->getNode($treeObj, $partOfParentID);
$data['node2'] = $partOfParenttNode;
$leafHTML = null;
$list2->setIteratorMode(SplDoublyLinkedList::IT_MODE_FIFO);
for ($list2->rewind(); $list2->valid(); $list2->next()) {
$item = $list2->current();
$leaf = $util->getNode($treeObj, $item);
$leafLinkName = str_replace(" ", "_", $leaf->lbl);
$leafLinkName = str_replace("(", "_", $leafLinkName);
$leafLinkName = str_replace(")", "_", $leafLinkName);
//$leafLink = "/SciCrunchKS/index.php/pages/view/".$leafLinkName;
$leafLink = "/" . Config::$localContextName . "/index.php/pages/view/" . $leaf->id;
//$leafHTML = $leafHTML . "<ul><li><span><i class=\"icon-leaf\"></i><a href=\"".$leafLink."\">" . $leaf->lbl . "</a></span> <a href=\"\"></a></li></ul>\n";
$leafHTML = $leafHTML . "<ul><li><span id=\"" . $leaf->id . "," . $mainNode->id . "\"><i class=\"icon-plus-sign\"></i>" . $leaf->lbl . "</span> <a href=\"" . $leafLink . "\"><img src=\"/img/view-icon.png\" width=\"25\" height=\"25\"></a></li></ul>\n";
}
$data['leafHTML2'] = $leafHTML;
//$list3 = $util->getChildrenIDsIncoming($treeObj, $curie,PropertyConfig::$part_of);
$list3 = $util->getChildrenIDsIncoming($treeObj, $curie, $data["config_array"]->part_of_property);
//$partOfParentID3 = $util->getParentIDIncoming($treeObj, $curie,PropertyConfig::$part_of);
$partOfParentID3 = $util->getParentIDIncoming($treeObj, $curie, $data["config_array"]->part_of_property);
$partOfParenttNode3 = $util->getNode($treeObj, $partOfParentID3);
$data['node3'] = $partOfParenttNode3;
$leafHTML = null;
$list3->setIteratorMode(SplDoublyLinkedList::IT_MODE_FIFO);
for ($list3->rewind(); $list3->valid(); $list3->next()) {
$item = $list3->current();
$leaf = $util->getNode($treeObj, $item);
$leafLinkName = str_replace(" ", "_", $leaf->lbl);
$leafLinkName = str_replace("(", "_", $leafLinkName);
$leafLinkName = str_replace(")", "_", $leafLinkName);
//$leafLink = "/SciCrunchKS/index.php/pages/view/".$leafLinkName;
$leafLink = "/" . Config::$localContextName . "/index.php/pages/view/" . $leaf->id;
//$leafHTML = $leafHTML . "<ul><li><span><i class=\"icon-leaf\"></i><a href=\"".$leafLink."\">" . $leaf->lbl . "</a></span> <a href=\"\"></a></li></ul>\n";
$leafHTML = $leafHTML . "<ul><li><span id=\"" . $leaf->id . "," . $mainNode->id . "\"><i class=\"icon-plus-sign\"></i>" . $leaf->lbl . "</span> <a href=\"" . $leafLink . "\"><img src=\"/img/view-icon.png\" width=\"25\" height=\"25\"></a></li></ul>\n";
}
$data['leafHTML3'] = $leafHTML;
}
public function view($sourceID, $term, $pageID)
{
//require_once 'JsonClientUtil.php';
//require_once 'Config.php';
require_once 'ServiceUtil.php';
require_once 'Config.php';
$util = new ServiceUtil();
$myConfig = new Config();
$myConfig->loadJsonConfig($data);
$data['test'] = NULL;
$term = str_replace("_", "%20", $term);
$newName = $term;
$searchName = $term;
if (strcasecmp($searchName, "cell") == 0) {
$newName = $searchName;
} else {
if (strcasecmp($searchName, "neuron") == 0) {
$newName = $searchName;
} else {
if ($util->endsWith($searchName, "%20cell")) {
$tempName = substr($searchName, 0, strlen($searchName) - strlen("%20cell"));
$newName = $tempName;
} else {
if ($util->endsWith($searchName, "%20neuron")) {
$tempName = substr($searchName, 0, strlen($searchName) - strlen("%20neuron"));
$newName = $tempName;
}
}
}
}
$offset = 0;
//echo "\nSourceID------".$sourceID;
//echo "\nTerm:".$term;
if (!isset($pageID) || $pageID <= 1) {
$offset = 0;
} else {
$offset = ($pageID - 1) * 20;
}
//echo "---------------".$newName;
$data['resultObj'] = $util->searchWithinSource($newName, $sourceID, 20, $offset);
// $data['resultObj'] = searchWithinSource2($term, $sourceID, 20,$offset);
/*if(endsWith($term, "%20cell"))
{
$tempName = substr($term, 0, strlen($term)-strlen("%20cell"));
//echo "-------------tempName:".$tempName."----".strlen($term)."--------";
$tempResult = searchWithinSource2($tempName, $sourceID, 20,$offset);
if($tempResult->result->resultCount > $data['resultObj']->result->resultCount)
$data['resultObj'] = $tempResult;
}*/
$data['sourceID'] = $sourceID;
$data['pageID'] = $pageID;
$data['term'] = $term;
$protocol = "http";
if (isset($_SERVER['HTTPS'])) {
$protocol = "https";
}
$surl = $protocol . "://" . $_SERVER['SERVER_NAME'] . "/" . Config::$localContextName . "/resources/source_description/" . $sourceID;
//echo "\n".$surl;
$responseCode = @get_headers($surl);
//echo "CODE:".$file_headers[0]."---------";
if ($responseCode[0] == 'HTTP/1.1 404 Not Found') {
$data['description'] = "";
} else {
$data['description'] = file_get_contents($surl);
}
//var_dump($data['resultObj']);
$data['page_title'] = "Search:" . str_replace("%20", " ", $term);
$data['enable_config'] = true;
$this->load->view('templates/header2', $data);
$this->load->view('pages/resultDisplay', $data);
$this->load->view('templates/footer2', $data);
}
public function view($page = 'home')
{
require_once 'ServiceUtil.php';
$util = new ServiceUtil();
require_once 'Config.php';
$myConfig = new Config();
$myConfig->loadJsonConfig($data);
$pageName = $page;
$termObj = NULL;
$termObj[0] = $util->getObjByCurie($pageName);
#echo "\n-------Willy----!is_null(termObj):".!is_null($termObj)."\n";
if (!is_null($termObj) && !is_null($termObj[0])) {
$data['curie'] = $termObj[0]->curie;
if (count($termObj[0]->labels) > 0) {
$data['pageName'] = $termObj[0]->labels[0];
$pageName = $data['pageName'];
//echo "PageName here-----".$pageName;
$originalPageName = $pageName;
$pageName = str_replace(" ", "%20", $pageName);
// echo "<br/>PageName here-----".$pageName;
$pageName = str_replace(",", "%2c", $pageName);
// echo "<br/>PageName here-----".$pageName;
$data['pageName'] = $pageName;
$isNifID = true;
} else {
$data['pageName'] = $pageName;
}
}
$pageName = str_replace(str_split('_'), '%20', $pageName);
$pageName = str_replace(str_split(','), '%2c', $pageName);
$pageName = str_replace(str_split('/'), '%2f', $pageName);
$data['pageName'] = $pageName;
$data['page_title'] = $pageName;
$data['title'] = $pageName;
$data['enable_config'] = true;
//$newCurie = str_replace(":","_",$data['curie']);
$fileName = "/" . $data['config_array']->cache_folder . "/" . $data['curie'] . "-literature-String.cache";
//echo "<br/>".$fileName;
$stats = NULL;
if (file_exists($fileName)) {
$stats = stat($fileName);
}
$current = time();
$diff = $current - $stats[9];
/*if (file_exists($fileName) && $diff > (86400 * 1))
{
unlink($fileName);
//echo "unlinking due to expiration.";
}
else if(file_exists($fileName) && filesize($fileName) == 0)
{
unlink($fileName);
//echo "unlinking due to empty file";
}*/
// $fileContent = file_get_contents($fileName);
//echo "<br/>File content:".$fileContent."------";
if (!file_exists($fileName)) {
//echo "<br/>----File does not exist:".$fileName."-----";
$this->handleLiterature($data, $pageName);
$this->load->view('pages/outputLiteratureAsString', $data);
} else {
//echo "<br/>----File exists:".$fileName;
$fileContent = file_get_contents($fileName);
$data['fileContent'] = $fileContent;
$this->load->view('pages/outputLiteratureAsString2', $data);
}
//$this->load->view('templates/header2', $data);
//$this->load->view('templates/footer2', $data);
}
public function view($page = 'home')
{
//require 'Globals.php';
//$enableCaching = false;
//require_once 'CacheConfig.php';
//require_once 'JsonClientUtil.php';
//require_once 'Config.php';
$this->load->helper('url');
require_once 'ServiceUtil.php';
$util = new ServiceUtil();
require_once 'Config.php';
$myConfig = new Config();
$myConfig->loadJsonConfig($data);
//$this->loadJsonConfig($data);
//init();
/*if ( ! file_exists(APPPATH.'/views/pages/'.$page.'.php'))
{
// Whoops, we don't have a page for that!
show_404();
}*/
$pageName = NULL;
$termObj = NULL;
$pageName = $page;
$pos = strpos($pageName, ":");
//echo "----pos:".$pos;
if ($pos == false) {
$pageName = str_replace("_", "%20", $page);
$pageName = str_replace(",", "%2c", $pageName);
$data["page"] = $page;
}
$isNifID = false;
$originalPageName = "";
//Loading sources configurations
/*$sources = $this->loadSourcesConfig($data);
if($sources != null)
{
$data['ks_sources'] = $sources;
}*/
//Loading categories configurations
/*$categories = $this->loadCategoriesConfig($data);
if($categories != null)
{
$data['categories'] = $categories;
}*/
if ($pos != false) {
$termObj[0] = $util->getObjByCurie($pageName);
#echo "\n-------Willy----!is_null(termObj):".!is_null($termObj)."\n";
if (!is_null($termObj) && !is_null($termObj[0])) {
$data['curie'] = $termObj[0]->curie;
if (count($termObj[0]->labels) > 0) {
$data['pageName'] = $termObj[0]->labels[0];
$pageName = $data['pageName'];
//echo "PageName here-----".$pageName;
$originalPageName = $pageName;
$pageName = str_replace(" ", "%20", $pageName);
// echo "<br/>PageName here-----".$pageName;
$pageName = str_replace(",", "%2c", $pageName);
// echo "<br/>PageName here-----".$pageName;
$data['pageName'] = $pageName;
$isNifID = true;
} else {
$data['pageName'] = $pageName;
}
} else {
$data['pageName'] = $pageName;
$termObj = getTerm($pageName);
}
} else {
$data['pageName'] = $pageName;
//echo "-----pageName:".$pageName;
$termObj = $util->getTerm($pageName);
//var_dump($termObj);
$protocol = !empty($_SERVER['HTTPS']) && $_SERVER['HTTPS'] !== 'off' || $_SERVER['SERVER_PORT'] == 443 ? "https://" : "http://";
$domainName = $_SERVER['HTTP_HOST'];
if (!is_null($termObj)) {
//echo "-------------termObj size: ".count($termObj);
if (count($termObj) == 1 && isset($termObj[0]) && !is_null($termObj[0]->curie)) {
//redirect('http://google.com', 'location');
redirect($protocol . "://" . $domainName . "/" . Config::$localContextName . "/index.php/pages/view/" . $termObj[0]->curie, 'refresh');
}
if (count($termObj) > 1) {
//http://localhost/NeuroKS/index.php/TermLanding/view/cerebellum%20purkinje%20cell
//redirect($protocol.":/".$domainName."/".Config::$localContextName."/index.php/Term/view/".$page, 'refresh');
$data['termObj'] = $termObj;
$temp_page_title = $pageName = str_replace(str_split('_,'), ' ', $page);
$data['page_title'] = "Term:" . $temp_page_title;
$data['enable_config'] = false;
//redirect('http://google.com', 'location');
//redirect($protocol."://".$domainName."/".Config::$localContextName."/index.php/pages/view/".$termObj[0]->curie, 'refresh');
//exit(0);
$this->load->view('templates/header2', $data);
$this->load->view('pages/DisplayTermLanding', $data);
$this->load->view('templates/footer2', $data);
return;
//exit(0);
}
$data['curie'] = $termObj[0]->curie;
}
}
//$pageName = str_replace(" ", "%20", $pageName);
//$pageName = str_replace(",", "%2c", $pageName);
//$pageName = str_replace("/", "%20", $pageName);
$pageName = str_replace(str_split('_'), '%20', $pageName);
$pageName = str_replace(str_split(','), '%2c', $pageName);
$pageName = str_replace(str_split('/'), '%2f', $pageName);
$data['pageName'] = $pageName;
$data['page_title'] = $pageName;
$data['enable_config'] = true;
//////////////////////
//$cachefile = '/webCache/'.basename($_SERVER['PHP_SELF']).'.cache'; // e.g. cache/index.php.cache
$cachefile = $data["config_array"]->cache_folder . basename($_SERVER['PHP_SELF']) . '.cache';
// e.g. cache/index.php.cache
$cachetime = 3600 * 24;
// time to cache in seconds
$c = "";
//if($this->enableCaching)
//echo "--------".$data["config_array"]->enableCaching;
if ($data["config_array"]->enable_caching) {
//echo "====cachiing----";
if (!file_exists($cachefile)) {
//Do nothing
} else {
if (file_exists($cachefile) && time() - $cachetime <= filemtime($cachefile)) {
$c = @file_get_contents($cachefile);
echo $c;
exit;
} else {
unlink($cachefile);
}
}
///////////////////////
if (is_null($termObj)) {
show_404();
return;
}
ob_start();
}
///////////////////////////////////////////////////////
$this->handleSummary($data, $termObj, $pageName);
//$data['title'] = ucfirst($page); // Capitalize the first letter
$stitle = "";
if (!$isNifID) {
$stitle = ucfirst($page);
$stitle = str_replace("_", " ", $stitle);
$data['title'] = $stitle;
} else {
$stitle = $originalPageName;
$data['title'] = $stitle;
}
#echo "\nWilly--------pageName:".$pageName."\n";
$this->handleDataSpace($data, $pageName);
if (isset($termObj[0])) {
$this->handleLexicon($data, $termObj[0]->curie);
}
$this->handleLiterature($data, $pageName);
$this->load->view('templates/header2', $data);
//$this->load->view('pages/'.$page, $data);
//$this->load->view('pages/term', $data);
$this->load->view('pages/layout', $data);
$this->load->view('templates/footer2', $data);
///////////////////////////////////////////////
//if($this->enableCaching)
if ($data["config_array"]->enable_caching) {
$c = ob_get_contents();
file_put_contents($cachefile, $c);
}
}
