function handleArticleNode(&$journal, &$articleNode, &$issue, &$section, &$article, &$publishedArticle, &$errors, &$user, $isCommandLine, &$dependentItems)
{
$errors = array();
$journalSupportedLocales = array_keys($journal->getSupportedLocaleNames());
// => journal locales must be set up before
$journalPrimaryLocale = $journal->getPrimaryLocale();
$publishedArticleDao =& DAORegistry::getDAO('PublishedArticleDAO');
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$article = new Article();
$article->setLocale($journalPrimaryLocale);
// FIXME in bug #5543
$article->setJournalId($journal->getId());
$article->setUserId($user->getId());
$article->setSectionId($section->getId());
$article->setStatus(STATUS_PUBLISHED);
$article->setSubmissionProgress(0);
$article->setDateSubmitted(Core::getCurrentDate());
$article->stampStatusModified();
$titleExists = false;
for ($index = 0; $node = $articleNode->getChildByName('title', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleTitleLocaleUnsupported', array('articleTitle' => $node->getValue(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setTitle($node->getValue(), $locale);
$titleExists = true;
}
if (!$titleExists || $article->getTitle($journalPrimaryLocale) == "") {
$errors[] = array('plugins.importexport.native.import.error.articleTitleMissing', array('issueTitle' => $issue->getIssueIdentification(), 'sectionTitle' => $section->getLocalizedTitle()));
return false;
}
for ($index = 0; $node = $articleNode->getChildByName('abstract', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleAbstractLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setAbstract($node->getValue(), $locale);
}
if ($indexingNode = $articleNode->getChildByName('indexing')) {
for ($index = 0; $node = $indexingNode->getChildByName('discipline', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleDisciplineLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setDiscipline($node->getValue(), $locale);
}
for ($index = 0; $node = $indexingNode->getChildByName('type', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleTypeLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setType($node->getValue(), $locale);
}
for ($index = 0; $node = $indexingNode->getChildByName('subject', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleSubjectLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setSubject($node->getValue(), $locale);
}
for ($index = 0; $node = $indexingNode->getChildByName('subject_class', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleSubjectClassLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setSubjectClass($node->getValue(), $locale);
}
if ($coverageNode = $indexingNode->getChildByName('coverage')) {
for ($index = 0; $node = $coverageNode->getChildByName('geographical', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleCoverageGeoLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setCoverageGeo($node->getValue(), $locale);
}
for ($index = 0; $node = $coverageNode->getChildByName('chronological', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleCoverageChronLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setCoverageChron($node->getValue(), $locale);
}
for ($index = 0; $node = $coverageNode->getChildByName('sample', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleCoverageSampleLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setCoverageSample($node->getValue(), $locale);
}
}
}
for ($index = 0; $node = $articleNode->getChildByName('sponsor', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleSponsorLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setSponsor($node->getValue(), $locale);
}
if ($node = $articleNode->getChildByName('pages')) {
$article->setPages($node->getValue());
}
if ($language = $articleNode->getAttribute('language')) {
$article->setLanguage($language);
}
/* --- Handle authors --- */
$hasErrors = false;
for ($index = 0; $node = $articleNode->getChildByName('author', $index); $index++) {
if (!NativeImportDom::handleAuthorNode($journal, $node, $issue, $section, $article, $authorErrors)) {
$errors = array_merge($errors, $authorErrors);
$hasErrors = true;
}
}
if ($hasErrors) {
return false;
}
/* --- Handle covers --- */
for ($index = 0; $node = $articleNode->getChildByName('cover', $index); $index++) {
if (!NativeImportDom::handleArticleCoverNode($journal, $node, $article, $coverErrors, $isCommandLine)) {
$errors = array_merge($errors, $coverErrors);
$hasErrors = true;
}
}
for ($index = 0; $node = $articleNode->getChildByName('id', $index); $index++) {
switch ($node->getAttribute('type')) {
case 'doi':
$article->setStoredDOI($node->getValue());
break;
}
}
$articleDao->insertArticle($article);
$dependentItems[] = array('article', $article);
// Create submission mangement records
$signoffDao =& DAORegistry::getDAO('SignoffDAO');
$initialCopyeditSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $article->getId());
$initialCopyeditSignoff->setUserId(0);
$signoffDao->updateObject($initialCopyeditSignoff);
$authorCopyeditSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $article->getId());
$authorCopyeditSignoff->setUserId(0);
$signoffDao->updateObject($authorCopyeditSignoff);
$finalCopyeditSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $article->getId());
$finalCopyeditSignoff->setUserId(0);
$signoffDao->updateObject($finalCopyeditSignoff);
$layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $article->getId());
$layoutSignoff->setUserId(0);
$signoffDao->updateObject($layoutSignoff);
$authorProofSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $article->getId());
$authorProofSignoff->setUserId(0);
$signoffDao->updateObject($authorProofSignoff);
$proofreaderProofSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $article->getId());
$proofreaderProofSignoff->setUserId(0);
$signoffDao->updateObject($proofreaderProofSignoff);
$layoutProofSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $article->getId());
$layoutProofSignoff->setUserId(0);
$signoffDao->updateObject($layoutProofSignoff);
// Log the import in the article event log.
import('classes.article.log.ArticleLog');
import('classes.article.log.ArticleEventLogEntry');
ArticleLog::logEvent($article->getId(), ARTICLE_LOG_ARTICLE_IMPORT, ARTICLE_LOG_TYPE_DEFAULT, 0, 'log.imported', array('userName' => $user->getFullName(), 'articleId' => $article->getId()));
// Insert published article entry.
$publishedArticle = new PublishedArticle();
$publishedArticle->setArticleId($article->getId());
$publishedArticle->setIssueId($issue->getId());
if ($node = $articleNode->getChildByName('date_published')) {
$publishedDate = strtotime($node->getValue());
if ($publishedDate === -1) {
$errors[] = array('plugins.importexport.native.import.error.invalidDate', array('value' => $node->getValue()));
return false;
} else {
$publishedArticle->setDatePublished($publishedDate);
}
}
$node = $articleNode->getChildByName('open_access');
$publishedArticle->setAccessStatus($node ? ARTICLE_ACCESS_OPEN : ARTICLE_ACCESS_ISSUE_DEFAULT);
$publishedArticle->setSeq(REALLY_BIG_NUMBER);
$publishedArticle->setViews(0);
$publishedArticle->setPublicArticleId($articleNode->getAttribute('public_id'));
$publishedArticle->setPubId($publishedArticleDao->insertPublishedArticle($publishedArticle));
$publishedArticleDao->resequencePublishedArticles($section->getId(), $issue->getId());
/* --- Galleys (html or otherwise handled simultaneously) --- */
import('classes.file.ArticleFileManager');
$articleFileManager = new ArticleFileManager($article->getId());
/* --- Handle galleys --- */
$hasErrors = false;
$galleyCount = 0;
for ($index = 0; $index < count($articleNode->children); $index++) {
$node = $articleNode->children[$index];
if ($node->getName() == 'htmlgalley') {
$isHtml = true;
} elseif ($node->getName() == 'galley') {
$isHtml = false;
} else {
continue;
}
if (!NativeImportDom::handleGalleyNode($journal, $node, $issue, $section, $article, $galleyErrors, $isCommandLine, $isHtml, $galleyCount, $articleFileManager)) {
$errors = array_merge($errors, $galleyErrors);
$hasErrors = true;
}
$galleyCount++;
unset($node);
}
if ($hasErrors) {
return false;
}
/* --- Handle supplemental files --- */
$hasErrors = false;
for ($index = 0; $node = $articleNode->getChildByName('supplemental_file', $index); $index++) {
if (!NativeImportDom::handleSuppFileNode($journal, $node, $issue, $section, $article, $suppFileErrors, $isCommandLine, $articleFileManager)) {
$errors = array_merge($errors, $suppFileErrors);
$hasErrors = true;
}
}
if ($hasErrors) {
return false;
}
// Index the inserted article.
import('classes.search.ArticleSearchIndex');
ArticleSearchIndex::indexArticleMetadata($article);
ArticleSearchIndex::indexArticleFiles($article);
return true;
}
/**
* Update cataloguing information for an existing study.
* @param Article $article
* @param DataverseStudy $study
* @return DataverseStudy
*/
function &updateStudy(&$article, &$study)
{
$journal =& Request::getJournal();
$packager = new DataversePackager();
// Add article metadata
$packager->addMetadata('title', $article->getLocalizedTitle());
$packager->addMetadata('description', $article->getLocalizedAbstract());
foreach ($article->getAuthors() as $author) {
$packager->addMetadata('creator', $author->getFullName(true));
}
// subject: academic disciplines
$split = '/\\s*' . DATAVERSE_PLUGIN_SUBJECT_SEPARATOR . '\\s*/';
foreach (preg_split($split, $article->getLocalizedDiscipline(), NULL, PREG_SPLIT_NO_EMPTY) as $subject) {
$packager->addMetadata('subject', $subject);
}
// subject: subject classifications
foreach (preg_split($split, $article->getLocalizedSubjectClass(), NULL, PREG_SPLIT_NO_EMPTY) as $subject) {
$packager->addMetadata('subject', $subject);
}
// subject: keywords
foreach (preg_split($split, $article->getLocalizedSubject(), NULL, PREG_SPLIT_NO_EMPTY) as $subject) {
$packager->addMetadata('subject', $subject);
}
// geographic coverage
foreach (preg_split($split, $article->getLocalizedCoverageGeo(), NULL, PREG_SPLIT_NO_EMPTY) as $coverage) {
$packager->addMetadata('coverage', $coverage);
}
// rights
$packager->addMetadata('rights', $journal->getLocalizedSetting('copyrightNotice'));
// publisher
$packager->addMetadata('publisher', $journal->getSetting('publisherInstitution'));
// metadata for published articles: public IDs, publication dates
$pubIdAttributes = array();
if ($article->getStatus() == STATUS_PUBLISHED) {
// publication date
$publishedArticleDao = DAORegistry::getDAO('PublishedArticleDAO');
$publishedArticle =& $publishedArticleDao->getPublishedArticleByArticleId($article->getId(), $article->getJournalId());
$datePublished = $publishedArticle->getDatePublished();
if (!$datePublished) {
// If article has no pub date, use issue pub date
$issueDao =& DAORegistry::getDAO('IssueDAO');
$issue =& $issueDao->getIssueByArticleId($article->getId(), $article->getJournalId());
$datePublished = $issue->getDatePublished();
}
$packager->addMetadata('date', strftime('%Y-%m-%d', strtotime($datePublished)));
// isReferencedBy: If article is published, add a persistent URL to citation using specified pubid plugin
$pubIdPlugin =& PluginRegistry::getPlugin('pubIds', $this->getSetting($article->getJournalId(), 'pubIdPlugin'));
if ($pubIdPlugin && $pubIdPlugin->getEnabled()) {
$pubIdAttributes['agency'] = $pubIdPlugin->getDisplayName();
$pubIdAttributes['IDNo'] = $article->getPubId($pubIdPlugin->getPubIdType());
$pubIdAttributes['holdingsURI'] = $pubIdPlugin->getResolvingUrl($article->getJournalId(), $pubIdAttributes['IDNo']);
} else {
// If no pub id plugin selected, use OJS URL
$pubIdAttributes['holdingsURI'] = Request::url($journal->getPath(), 'article', 'view', array($article->getId()));
}
}
// isReferencedBy
$packager->addMetadata('isReferencedBy', $this->getCitation($article), $pubIdAttributes);
// Include (some) suppfile metadata in study
$suppFileDao =& DAORegistry::getDAO('SuppFileDAO');
$dataverseFileDao =& DAORegistry::getDAO('DataverseFileDAO');
$dvFiles =& $dataverseFileDao->getDataverseFilesByStudyId($study->getId());
foreach ($dvFiles as $dvFile) {
$suppFile =& $suppFileDao->getSuppFile($dvFile->getSuppFileId(), $article->getId());
if (isset($suppFile)) {
// subject
foreach (preg_split($split, $suppFile->getSuppFileSubject(), NULL, PREG_SPLIT_NO_EMPTY) as $subject) {
$packager->addMetadata('subject', $subject);
}
// Type of file
if ($suppFile->getType()) {
$packager->addMetadata('type', $suppFile->getType());
}
// Type of file, user-defined:
if ($suppFile->getSuppFileTypeOther()) {
$packager->addMetadata('type', $suppFile->getSuppFileTypeOther());
}
}
}
// Write atom entry to file
$packager->createAtomEntry();
// Update the study in Dataverse
$client = $this->_initSwordClient();
$depositReceipt = $client->replaceMetadata($study->getEditUri(), $this->getSetting($article->getJournalId(), 'username'), $this->getSetting($article->getJournalId(), 'password'), '', $packager->getAtomEntryFilePath());
if ($depositReceipt->sac_status != DATAVERSE_PLUGIN_HTTP_STATUS_OK) {
return false;
}
// Updating the metadata may have updated the data citation
$study->setDataCitation($depositReceipt->sac_dcterms['bibliographicCitation'][0]);
$dataverseStudyDao =& DAORegistry::getDAO('DataverseStudyDAO');
$dataverseStudyDao->updateStudy($study);
return $study;
}
